added back missing scripts

script/download-kim-2009-dataset.sh

+#!/usr/bin/env bash
+
+# Copyright (c) 2015. Mount Sinai School of Medicine
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# Download 2009 subset dataset from Kim/Peters
+# 2013 "Dataset size and composition" paper
+rm -f bdata.2009.mhci.public.1*
+wget https://dl.dropboxusercontent.com/u/3967524/bdata.2009.mhci.public.1.txt
+DATA_DIR=`python -c "import mhcflurry; print(mhcflurry.paths.CLASS1_DATA_DIRECTORY)"`
+mkdir -p -- "$DATA_DIR"
+mv bdata.2009.mhci.public.1.txt "$DATA_DIR"

script/download-kim-2013-dataset.sh

+#!/usr/bin/env bash
+
+# Copyright (c) 2015. Mount Sinai School of Medicine
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# Download dataset from Kim/Peters 2013 "Dataset size and composition" paper
+rm -f bdata.20130222.mhci.public*
+wget https://dl.dropboxusercontent.com/u/3967524/bdata.20130222.mhci.public.1.txt
+DATA_DIR=`python -c "import mhcflurry; print(mhcflurry.paths.CLASS1_DATA_DIRECTORY)"`
+mkdir -p -- "$DATA_DIR"
+mv bdata.20130222.mhci.public.1.txt "$DATA_DIR"

script/download-kim-blind-dataset.sh

+#!/usr/bin/env bash
+
+# Copyright (c) 2015. Mount Sinai School of Medicine
+#
+# Licensed under the Apache License, Version 2.0 (the "License");
+# you may not use this file except in compliance with the License.
+# You may obtain a copy of the License at
+#
+#     http://www.apache.org/licenses/LICENSE-2.0
+#
+# Unless required by applicable law or agreed to in writing, software
+# distributed under the License is distributed on an "AS IS" BASIS,
+# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+# See the License for the specific language governing permissions and
+# limitations under the License.
+
+# Download BLIND 2013 dataset from Kim/Peters 2013
+# "Dataset size and composition" paper
+rm -f bdata.2013.mhci.public.blind*
+
+wget https://dl.dropboxusercontent.com/u/3967524/bdata.2013.mhci.public.blind.1.txt
+DATA_DIR=`python -c "import mhcflurry; print(mhcflurry.paths.CLASS1_DATA_DIRECTORY)"`
+mkdir -p -- "$DATA_DIR"
+mv bdata.2013.mhci.public.blind.1.txt "$DATA_DIR"