Deleted mhcflurry/__init__.py, mhcflurry/allele_encoding.py,...

Deleted mhcflurry/__init__.py, mhcflurry/allele_encoding.py, mhcflurry/amino_acid.py, mhcflurry/calibrate_percentile_ranks_command.py, mhcflurry/class1_affinity_predictor.py, mhcflurry/class1_neural_network.py, mhcflurry/class1_presentation_predictor.py, mhcflurry/class1_processing_neural_network.py, mhcflurry/class1_processing_predictor.py, mhcflurry/cluster_parallelism.py, mhcflurry/common.py, mhcflurry/custom_loss.py, mhcflurry/data_dependent_weights_initialization.py, mhcflurry/downloads.py, mhcflurry/downloads.yml, mhcflurry/downloads_command.py, mhcflurry/encodable_sequences.py, mhcflurry/ensemble_centrality.py, mhcflurry/fasta.py, mhcflurry/flanking_encoding.py, mhcflurry/hyperparameters.py, mhcflurry/local_parallelism.py, mhcflurry/percent_rank_transform.py, mhcflurry/predict_command.py, mhcflurry/predict_scan_command.py, mhcflurry/random_negative_peptides.py, mhcflurry/regression_target.py, mhcflurry/scoring.py, mhcflurry/select_allele_specific_models_command.py, mhcflurry/select_pan_allele_models_command.py, mhcflurry/select_processing_models_command.py, mhcflurry/testing_utils.py, mhcflurry/train_allele_specific_models_command.py, mhcflurry/train_pan_allele_models_command.py, mhcflurry/train_presentation_models_command.py, mhcflurry/train_processing_models_command.py, mhcflurry/version.py, train_APmodels.sh files