Merge pull request #114 from hammerlab/2017-11-13 (bbcfc2ba) · Commits · Patrick Skillman-Lawrence / mhc_rank · GitLab

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bbcfc2ba

Unverified Commit bbcfc2ba authored 7 years ago by Tim O'Donnell Committed by GitHub 7 years ago

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Merge pull request #114 from hammerlab/2017-11-13

Implement BLOSUM62 encoding

parents 1c3da71b ed9372c2

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README.md 28 additions, 2 deletions

README.md
downloads-generation/models_class1/GENERATE.sh 2 additions, 2 deletions

downloads-generation/models_class1/GENERATE.sh
downloads-generation/models_class1/hyperparameters.json 0 additions, 37 deletions

downloads-generation/models_class1/hyperparameters.json
downloads-generation/models_class1/hyperparameters.yaml 54 additions, 0 deletions

downloads-generation/models_class1/hyperparameters.yaml
mhcflurry/__init__.py 1 addition, 1 deletion

mhcflurry/__init__.py
mhcflurry/class1_affinity_prediction/class1_neural_network.py 30 additions, 10 deletions

...lurry/class1_affinity_prediction/class1_neural_network.py
mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py 3 additions, 3 deletions

...finity_prediction/train_allele_specific_models_command.py
mhcflurry/encodable_sequences.py 98 additions, 75 deletions

mhcflurry/encodable_sequences.py
requirements.txt 4 additions, 3 deletions

requirements.txt
setup.py 5 additions, 4 deletions

setup.py
test/test_encodable_sequences.py 8 additions, 1 deletion

test/test_encodable_sequences.py
test/test_train_allele_specific_models_command.py 1 addition, 1 deletion

test/test_train_allele_specific_models_command.py

with 234 additions and 139 deletions

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