Merge pull request #12 from hammerlab/soft-pretraining
Soft-pretraining and lots of other changes
No related branches found
No related tags found
Showing
- experiments/allele_similarities.py 255 additions, 0 deletionsexperiments/allele_similarities.py
- experiments/best-synthetic-data-hyperparams.py 317 additions, 0 deletionsexperiments/best-synthetic-data-hyperparams.py
- experiments/common.py 72 additions, 0 deletionsexperiments/common.py
- experiments/compute-allele-similarities.py 102 additions, 191 deletionsexperiments/compute-allele-similarities.py
- experiments/cross_validation_affinity_data.py 68 additions, 0 deletionsexperiments/cross_validation_affinity_data.py
- experiments/matrix-completion-accuracy.py 196 additions, 0 deletionsexperiments/matrix-completion-accuracy.py
- experiments/matrix-completion-hyperparameter-search.py 507 additions, 0 deletionsexperiments/matrix-completion-hyperparameter-search.py
- experiments/matrix_completion_helpers.py 205 additions, 0 deletionsexperiments/matrix_completion_helpers.py
- experiments/model-selection.py 2 additions, 0 deletionsexperiments/model-selection.py
- experiments/synthesize-augmented-dataset.py 127 additions, 0 deletionsexperiments/synthesize-augmented-dataset.py
- experiments/synthetic_data.py 159 additions, 0 deletionsexperiments/synthetic_data.py
- experiments/train-models-with-synthetic-pretraining.py 208 additions, 0 deletionsexperiments/train-models-with-synthetic-pretraining.py
- experiments/training_helpers.py 393 additions, 27 deletionsexperiments/training_helpers.py
- mhcflurry/__init__.py 9 additions, 5 deletionsmhcflurry/__init__.py
- mhcflurry/amino_acid.py 80 additions, 5 deletionsmhcflurry/amino_acid.py
- mhcflurry/class1_binding_predictor.py 424 additions, 0 deletionsmhcflurry/class1_binding_predictor.py
- mhcflurry/common.py 21 additions, 54 deletionsmhcflurry/common.py
- mhcflurry/data.py 398 additions, 0 deletionsmhcflurry/data.py
- mhcflurry/ensemble.py 27 additions, 0 deletionsmhcflurry/ensemble.py
- mhcflurry/feedforward.py 3 additions, 2 deletionsmhcflurry/feedforward.py
Loading
Please register or sign in to comment