update

downloads-generation/models_class1/GENERATE.sh

@@ -38,7 +38,7 @@ time mhcflurry-class1-train-allele-specific-models \
     --percent-rank-calibration-num-peptides-per-length 1000000 \
     --min-measurements-per-allele 75 \
     --train-num-jobs 0 \
-    --calibration-num-jobs 4
+    --calibration-num-jobs 1
 
 cp $SCRIPT_ABSOLUTE_PATH .
 bzip2 LOG.txt

mhcflurry/class1_affinity_predictor.py

@@ -933,6 +933,10 @@ class Class1AffinityPredictor(object):
 
         if worker_pool and len(alleles) > 1:
             # Run in parallel
+
+            # Performance hack.
+            self.neural_networks[0].peptides_to_network_input(encoded_peptides)
+
             do_work = partial(
                 _calibrate_percentile_ranks,
                 predictor=self,