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Commit a04d49f4 authored by Alex Rubinsteyn's avatar Alex Rubinsteyn
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Merge pull request #4 from hammerlab/nips-2015 

False start of a NIPS paper
parents a09e3627 09e7fc17
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experiments/analyze-results.py 0 → 100755
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#!/usr/bin/env python
#
# Copyright (c) 2015. Mount Sinai School of Medicine
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from argparse import ArgumentParser
import pandas as pd
import numpy as np
from summarize_model_results import (
hyperparameter_performance,
hyperparameter_score_difference_hypothesis_tests,
)
parser = ArgumentParser()
parser.add_argument(
"filename",
help="CSV with results from hyperparameter search")
parser.add_argument(
"--latex-table-filename",
default=None,
help="Path to file where we should write a LaTeX table summarizing results")
def infer_dtypes(df):
column_names = list(df.columns)
for column_name in column_names:
column_values = np.array(df[column_name])
if "object" in str(column_values.dtype):
if any("." in value for value in column_values):
print("Converting %s to float" % column_name)
df[column_name] = column_values.astype(float)
elif all(value.isdigit() for value in column_values):
print("Converting %s to int" % column_name)
df[column_name] = column_values.astype(int)
return df
def generate_latex_table(results_dict, caption="CAPTION", label="LABEL"):
template = """
\\begin{table}[htbp]
\\label{%(label)s}
\\begin{center}
\\begin{tabular}{cccc}
\\multicolumn{1}{c}{\\bf Hyperparameter} &
\\multicolumn{1}{c}{\\bf Better} &
\\multicolumn{1}{c}{\\bf Worse} &
\\multicolumn{1}{c}{\\bf p-value}\\\\
\hline \\\\
%(content)s
\\end{tabular}
\\caption{%(caption)s}
\\end{center}
\\end{table}
"""
lines = []
for hyperparameter_name, pairwise_results in sorted(
results_dict.items(),
key=lambda x: min(result.p for result in x[1])):
for result in sorted(pairwise_results, key=lambda result: result.p):
log_p = np.log10(result.p)
if log_p < -4:
p_str = "10^{%d}" % int(log_p)
else:
p_str = "%0.4f" % result.p
lines.append(
"\t\t%s & {\\bf %s} & %s & $%s$" % (
hyperparameter_name.replace("_", " "),
str(result.better_value).replace("_", " "),
str(result.worse_value).replace("_", " "),
p_str))
#
# Input Encoding & 1-of-k binary, vector embedding \\
# \# Pre-training Epochs & 0, 10 \\
# Hidden Layer Size & 50, 400 \\
return template % {
"label": label,
"caption": caption,
"content": "\\\\\n".join(lines)
}
if __name__ == "__main__":
args = parser.parse_args()
results = pd.read_csv(args.filename, sep=",", header=0)
results = infer_dtypes(results)
hyperparameter_columns = list(sorted({
name for name in results.columns
if "idx" not in name
and "_mean" not in name
and "_median" not in name
and "_min" not in name
and "_max" not in name
and "_iqr" not in name
and "_std" not in name
and "_amin" not in name
and "_amax" not in name
and "dataset_size" not in name
and "allele_name" not in name
}))
max_score = 0
best_f1 = 0
best_auc = 0
best_config = None
for _, group in results.groupby("config_idx"):
auc = group["auc_mean"]
f1 = group["f1_mean"]
auc_std = group["auc_std"]
f1_std = group["f1_std"]
score = np.mean(
np.sqrt(np.array(auc * f1)))
config_row = group[hyperparameter_columns].iloc[0]
print(config_row)
print("-- AUC: %0.4f +/- %0.4f (%0.4f), F1: %0.4f +/- %0.4f (%0.4f), combined: %0.4f" % (
auc.mean(),
auc.std(),
auc_std.median(),
f1.mean(),
f1.std(),
f1_std.median(),
score))
if score > max_score:
best_auc = auc.mean()
best_f1 = f1.mean()
max_score = score
best_config = config_row
print("Best score: %0.4f, AUC=%0.4f, f1=%0.4f, hyperparameters:\n%s" % (
max_score, best_auc, best_f1, best_config))
print("=== Score Distributions For Hyperparameters ===")
hyperparameter_performance(results)
print("\n\n=== Hyperparameter Value Comparisons ===")
results = hyperparameter_score_difference_hypothesis_tests(results)
print(generate_latex_table(results))
experiments/arg_parsing.py 0 → 100644
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# Copyright (c) 2015. Mount Sinai School of Medicine
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
def parse_int_list(string):
substrings = [substring.strip() for substring in string.split(",")]
return [int(substring) for substring in substrings if substring]
def parse_float_list(string):
substrings = [substring.strip() for substring in string.split(",")]
return [float(substring) for substring in substrings if substring]
def parse_string_list(string):
return [substring.strip() for substring in string.split(",")]
experiments/benchmark_mhci_reliability/predictions/blind/.DS_Store 0 → 100644
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experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Db-8.xls 0 → 100644
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sequence meas pred
AAFEFVYV 4.489 3.810
AFFAFRYV 4.944 4.278
AGLLFVLL 4.944 4.176
AGLQVINL 4.774 4.399
AHICYANL 4.832 4.376
AHWDYLHL 3.945 4.445
AHYNIVTF 5.000 4.396
AIAPFRHL 4.944 4.399
AITNAKII 4.342 4.525
AKYAFDPM 4.234 4.105
ALYRYLRA 4.944 4.557
ARFCFPGL 4.223 4.385
ASFVFVIL 4.710 3.700
ASPQHSGL 4.944 4.437
ATTLFASV 4.944 4.507
ATYFLAAV 4.944 4.354
AVIRFQQL 4.670 4.221
AVLAFVAL 4.690 4.124
AVSQYCSM 4.874 4.488
CAFVVYNL 4.836 4.069
CSALYRYL 4.826 4.193
CSYMSGYL 3.759 3.773
CTLTFARI 4.734 4.321
DRAHYNIV 5.000 4.618
EMIRYMAL 4.749 4.366
EQYKFYSV 4.171 4.529
ESYAYLCL 4.944 4.306
ETLWYTRV 4.944 4.569
EVVQPENL 2.322 4.553
FAPLFTNL 3.900 3.594
FAPRYLTL 3.607 3.645
FAYRFLSR 4.799 4.378
FILHTANL 4.130 4.222
FKFFFHRL 4.341 4.028
FLIAYQPL 4.116 3.833
FNFAYLKV 4.309 4.353
FSILYSVL 3.483 3.452
FSRVYGEV 4.944 4.481
FTMGVLCL 4.083 4.354
FVRDFAQL 4.849 4.374
GAINFINL 3.106 3.931
HIYTFWRL 4.477 4.339
HNLCFSTL 3.964 4.233
HSPAYPTL 4.499 4.218
HTPLFSFL 4.204 4.361
HYNIVTFC 5.000 4.604
IADKYACL 4.407 4.422
IAESFYDL 3.955 4.214
IALLTNSL 4.548 4.133
ICFTPGNL 4.944 4.394
ICYPVTTL 4.944 4.122
IEMLYPNL 3.906 4.379
IGFILYKV 4.670 4.396
IGLQYAMS 4.670 4.562
IGPLWARL 4.852 4.477
IGYKLTGV 4.944 4.510
IIHILKRL 4.670 4.414
IKLIYRSL 4.670 4.483
ILFLWSFL 4.944 4.040
ILFSYDEL 4.735 4.106
ILQAFAPL 4.291 4.178
ILQMYMSV 4.653 4.549
IMRVCRHL 4.665 4.490
IMSQFRKL 4.944 4.388
INFDWPFL 3.995 4.185
INLVFQNA 4.670 4.543
INNTFLHL 3.921 4.235
INQLFRVL 4.944 4.470
INWNFIRI 4.509 4.259
INYSALNL 4.184 4.350
IPYNYPDM 4.670 4.327
IRRVYGLL 4.944 4.572
ISAAYKGI 4.670 4.513
ISCLLYDL 4.786 4.243
ISFSFPDG 4.944 4.333
ISRLFATS 4.944 4.481
ISTVHGPM 4.670 4.129
ISYDYSEY 4.944 4.405
ISYGLSTM 4.156 3.818
ISYSSGAI 4.243 4.202
ITHRFFEL 4.834 4.198
ITVYYAVL 4.944 4.268
ITYIYLAH 4.944 4.481
IVLCIAAL 3.629 4.219
IVYLCPVL 3.354 4.340
IVYVPEPM 4.056 4.002
KGFLLTSL 4.544 4.194
KIYYYVMV 4.816 4.392
KQLNYCHL 3.733 4.109
KSFCVTIL 3.772 4.030
KSYILTTL 3.739 3.602
KVVIFILL 4.543 4.430
KVVQYENL 3.512 4.392
LAPVFAFL 4.348 3.921
LFFSVYAL 4.780 4.367
LGYAYINS 4.777 4.570
LGYVYARA 4.606 4.547
LLFVHAGL 4.944 4.440
LLLRFPAL 3.878 4.363
LMLEYQRL 4.944 4.408
LNILHMLL 4.787 4.458
LNRIYRFL 4.670 4.472
LQYAMSLL 4.882 4.289
LQYPYTKI 4.944 4.377
LRRAYAPL 4.430 4.478
LSYIIGLL 4.670 4.373
LTQLFPGL 4.944 4.524
LTTRYYLL 4.944 4.494
LTTTFRPL 4.944 4.311
LTVLFAIL 4.680 4.345
LVFRFSEV 4.944 4.291
LVLKYDPL 3.972 4.087
LVYDASPL 4.744 4.311
MGYCRARL 4.944 4.479
MGYTYARV 4.866 4.470
MLLAFMTL 4.708 4.231
MSNPFGAL 4.264 4.393
MSYDYPKM 4.670 4.343
MVLNGANL 3.390 4.288
MVSVYQSL 4.392 4.536
NVINYSAL 3.218 4.177
QTFDFGRL 4.944 4.456
RAFDFKQL 4.944 4.144
RAHYNIVT 3.653 4.367
RAYLYHRR 4.944 4.521
RGPFFVGL 4.944 4.452
RIYAATNV 4.757 4.496
RNFWLYRL 4.288 4.325
RQYFYMNK 4.699 4.533
RTFETHPL 4.944 4.131
RTLAYARM 4.944 4.359
RTYAPGAL 4.944 4.457
RVAPYAGL 3.991 4.509
RVFVLGSL 4.816 4.284
RVYIYYNH 4.776 4.475
SAFECAVL 4.214 4.070
SAINYALI 2.120 3.678
SFYNFLQR 4.944 4.426
SFYRFFLV 4.564 4.411
SFYRFLFA 4.675 4.380
SGFAFVNA 4.944 4.395
SHFVYTPS 4.944 4.473
SIIQAHNL 4.944 4.294
SIYRYYGL 4.813 4.228
SLFSWLHL 4.212 4.161
SMFASCNL 3.555 4.147
SNFVFAGI 4.197 4.342
SNFVSAGI 4.274 4.484
SNPQYRLV 4.670 4.553
SNRRFLPL 4.239 4.237
SPGKYAPL 4.766 4.467
SPYVFALA 4.944 4.532
SRFFHAEL 4.812 4.380
SRLIFSGL 4.944 4.510
SSAIFRRI 4.944 4.443
SSFITGSV 4.821 4.404
SSFRHWFI 3.159 3.559
SSIEFARL 4.944 4.018
SSLSFLSL 3.630 3.608
SSYKLNAV 4.727 4.287
SSYRGFAV 4.389 4.077
STCSYAGL 4.944 4.486
STFEHQKL 4.944 4.385
STIVFASS 4.944 4.547
STRFYNNM 4.670 4.456
SVYGFTGV 4.944 4.386
SVYRCGEL 4.718 4.349
SVYVAPSL 4.568 4.338
SVYVFHGG 4.944 4.495
SYPQFLAL 4.233 4.413
TAYALAVL 4.289 3.912
TDYYFSHL 4.720 4.061
TGQAFAAL 4.470 4.450
TLREYARL 4.944 4.558
TQIRFPAL 4.374 4.192
TRFIYLAL 4.249 4.422
TSFLYNLR 4.944 4.482
TSFRASSL 4.944 4.199
TSNEFYNV 4.670 4.448
TTANFHTL 4.944 4.093
TTLLFVVM 4.502 4.099
TTPAYSLL 4.944 4.484
TVFGASPL 4.724 4.160
TVFNFAYL 2.957 3.476
VAYLGAFL 3.316 3.541
VEFAYRFL 4.944 4.080
VEHEFGNL 4.944 4.469
VEYLLEQL 4.798 4.301
VFCALARL 4.204 4.500
VFFNVSVL 4.340 4.143
VFQMYTRI 4.445 4.514
VFVILARL 4.189 4.474
VGIDAANL 4.369 4.441
VGLSFDPL 3.505 3.510
VGYQGARV 4.944 4.496
VHTQFALL 4.944 4.434
VIFFFERV 4.944 4.135
VIFNTKPI 3.974 3.955
VLCHYVRV 4.944 4.545
VLFLHLYL 4.603 4.001
VLYPFFLL 3.973 4.200
VMLRWGLL 4.170 4.032
VMRFFGGL 4.944 4.388
VNFDYSRT 4.085 4.519
VPVEFLRL 4.281 4.517
VPYVLALV 4.944 4.507
VSEGFAPL 4.555 3.937
VSERLTRL 4.670 4.327
VSFNFLVA 4.462 4.082
VSFRYEDQ 4.944 4.396
VSLATKRL 4.944 4.365
VSLRRAVL 4.818 4.029
VSLVAGAL 4.527 4.088
VSPHPSPL 3.857 4.008
VSQHAGPL 4.928 4.328
VSRQHAYL 4.627 4.052
VSSAYSRL 4.944 4.414
VSSDYDML 4.859 4.449
VSYVVTYL 3.960 3.427
VTFGWYRL 4.742 4.236
VTFLYHRP 4.787 4.484
VTHPLTPL 3.953 3.896
VTLFSAHL 4.649 4.202
VTLKYARA 4.944 4.572
VTRRFPIL 4.944 4.408
VTWAVRAL 4.944 4.405
VTYLGGDL 4.944 4.391
VVFDFASL 3.909 3.984
VVFTLPVL 3.008 4.035
VVGWFLYL 4.648 4.107
VVIILVFL 4.944 3.924
VVIQHTPI 3.959 3.614
VVMITAAL 4.764 4.265
VVPAHPGL 4.944 4.533
VVVLYSPL 3.762 3.960
VVVNVMTL 2.852 4.098
VVVRPANL 4.911 4.393
VVWALLGL 4.944 4.302
VVYNLTGV 4.891 4.305
YGREFMGL 4.944 4.545
YNFVFSST 4.670 4.472
YRFLFAFL 4.568 4.102
YTYLSRRL 4.944 4.412
YVLHFACL 4.598 4.037
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Db-9.xls 0 → 100644
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sequence meas pred
AAACNVATA 2.818 2.190
AAFVNDYSL 1.889 1.242
AAIANQAAV 0.000 0.984
AAIANQAVV 0.181 0.932
AAIENYVRF 1.578 2.402
AAINFITTM 0.499 2.301
AAIPAPPPI 3.511 3.025
AAKLNRPPL 2.816 1.822
AALDMVDAL 2.361 2.738
AALQHLRSI 2.957 3.227
AALVRLTAL 3.044 2.639
AAMVPTGSL 3.264 3.608
AANSPWAPV 3.636 2.956
AAPSGAAPL 0.454 1.991
AAPVSEPTV 2.029 3.424
AAVANGFAA 1.921 2.312
AAVLLGAPV 2.572 2.506
AAVQLLFPA 2.541 3.397
AAVTAGVAL 2.361 3.191
AAVVNRSLV 0.935 1.420
AAYVPADAV 2.521 3.245
ACMVNLERL 2.868 2.379
ADLVNHPPV 2.747 3.229
AEMEEALKG 4.895 4.616
AGLDNKFYL 2.819 2.553
AGLVSFNFL 2.324 2.793
AGTINHPAI 2.215 3.250
AHYNIVTFC 4.591 4.600
ALMRNLNSL 2.743 2.291
ALVSNRVTL 2.904 2.015
AMCTNTFVL 2.957 1.552
AMFHNGRVV 2.433 2.741
AMLCGFSPA 2.987 3.111
AMNKFTQTI 3.851 3.475
AMPADFCAI 2.680 2.809
ANYNRWPYI 2.957 4.397
AQLMPSPPM 3.738 2.984
AQLVDDFTL 2.988 2.754
ARIVNSVFV 1.321 3.244
ASIIALVFL 4.895 2.805
ASLTSFAAI 2.158 1.877
ATVRSTLPI 2.422 2.858
AVCINNTFL 2.653 2.813
AVLTNALLL 2.350 2.130
CAVINTVCA 3.674 2.970
CLLCNLLLV 2.347 2.753
CNLTDQTEI 3.876 3.126
CSFHNRVTL 2.669 1.476
DAVRNTNEA 2.050 3.635
DQIENIAKL 3.136 3.441
DRAHYNIVT 5.000 4.626
EAFLNFTSM 2.264 1.818
EAIALLDTV 2.486 3.561
EANIDIDPM 3.455 3.149
EMVLNGANL 3.059 2.793
FAATSREAL 1.549 2.501
FAFVNAAHA 0.688 1.523
FAHVALCAI 2.308 2.289
FAILVVSLL 4.326 3.470
FALLKRAFL 2.049 2.289
FAPLRTSLL 3.460 3.871
FAVELIATL 1.823 1.986
FGLLNYALV 0.053 1.116
FLDTNTDAM 4.670 2.233
FLPRLGTEL 3.494 3.390
FLRMNLNPL 2.755 2.520
FMDGTMSQV 4.273 4.510
FMFVNGALT 1.918 2.476
FMVSSIDEL 2.283 1.625
FNLQSIIPI 2.822 2.685
FQAGNWASL 2.257 2.543
FQQLNKRLL 2.709 3.790
FSLFNPRDL 1.781 1.759
FSRRNATGL 3.545 3.085
FSTRFYNNM 4.670 3.481
FTQKSLFPI 2.491 3.786
FTRSNVIVI 3.015 2.996
FVVMLIIIM 4.135 3.635
GALRLGAVM 1.465 2.559
GALVNASSA 1.078 2.981
GAMRAVVPI 2.698 2.553
GAPRNRELF 1.707 2.987
GEEVQVIAV 4.895 4.606
GSYCNTLSL 2.232 2.067
HALLNATTY 2.799 2.817
HALVSGVPL 1.442 1.792
HATANVAEL 2.617 1.675
HGLRNSQFV 0.891 2.277
HTIQNGDYF 0.699 2.153
HYYTNGYYV 3.509 3.296
IAESFYDLF 4.567 4.458
IALLDTVAV 2.659 2.835
IAVTPRPPI 2.555 2.778
IGFILYKVL 4.670 4.319
IGLLNTIMV 3.326 2.831
ILHRWYEHM 4.670 3.961
IMLSSKAIM 3.877 2.915
IMRRNGLAI 3.013 2.698
INLVFQNAI 3.942 4.200
INYSALNLT 3.912 4.604
IQNTNSPSV 3.749 3.529
ISFSETNAL 4.021 4.277
ISLTVWIPM 4.598 2.583
ITYNKITTL 2.044 4.362
IYRSFYRRT 4.670 4.626
KAILSSVAL 2.997 3.029
KAIMRRNGL 4.670 4.432
KIIRNRGHM 4.670 2.997
KMVAPATYL 3.479 2.701
KSYILTTLL 2.734 3.348
KVGSNIEEI 2.859 2.842
KWLKYCIEL 3.840 4.579
LALVAAFAL 4.705 3.351
LAMSPRTSI 4.339 3.135
LAPNNVSEL 0.545 2.238
LAPVPKTPL 3.051 2.718
LARFNPDAV 4.220 3.208
LATNNSQFI 2.315 2.476
LAVVLWSLL 3.579 3.248
LGLSNKLPV 2.388 2.227
LNFLHRLSV 3.991 4.525
LNLVNRRAV 3.981 3.599
LPQFATAAT 4.895 4.624
LQTDNYTLM 2.650 3.284
LSILLRDWL 1.309 2.655
LSLGDLDTI 2.796 2.845
LSLNFLHRL 3.885 4.350
LSLTNCPNF 1.890 3.892
LSPSNRRFL 1.486 2.416
LSRFNANYV 2.862 3.689
LSSVNADTL 2.100 1.637
LSVLSPNFI 2.959 3.246
LTAKNLASL 3.226 3.458
LTTANFHTL 3.168 2.655
LTVFNFAYL 2.465 1.694
LTVINRLQL 3.078 3.380
LVIFNTKPI 3.247 2.435
LVYVIQLPL 3.231 4.300
MMVENLTLL 1.716 1.356
MQLRNTCPL 0.056 1.023
NAITNAKII 3.301 1.374
NALLLGVFL 2.059 2.720
NALTNDGPT 1.914 3.232
NAVRLRHPL 2.581 2.303
NDVSNKDSL 2.970 3.894
NELVNPDVV 3.780 2.558
NIWVNLNNL 3.879 3.472
NKNLNKSYI 2.948 3.478
NLLNNYDVL 2.070 2.102
NMLNNLIDA 3.407 3.632
NNVINYSAL 1.815 2.725
NSVKNSSSF 2.869 3.688
NVTRNPTHL 3.299 2.794
NYITNPANL 4.533 3.197
PAARNGDAL 3.770 2.162
PSAINYALI 2.515 2.763
PTMPYWCPM 4.670 4.282
QATTNKATL 1.900 1.845
QIVRNDPPL 2.983 3.116
QMLPPTDPL 4.360 3.292
QMYVNRNEI 1.101 1.622
QSGLYRYHM 4.313 4.289
QSLFSWLHL 3.159 3.842
QSLVGTYVI 2.893 2.471
QVMLRWGLL 3.826 4.526
RAFLKQHPL 3.156 3.539
RAHYNIVTF 1.151 2.751
RAHYNIVTI 0.000 1.336
RAHYNIVTL 0.000 1.538
RAHYNIVTM 0.000 1.314
RAHYNIVTR 5.000 4.125
RAHYNIVTV 0.000 1.897
RAILNAPVA 1.623 2.324
RAKYAFDPM 3.394 3.608
RALLLYVNI 3.839 2.800
RAPQNRPSV 1.673 2.256
RAQANDGFI 1.878 3.123
RATCSAAYL 3.280 2.648
RGLCGLDEL 3.896 2.730
RLLLNRFTM 1.906 1.700
RQLALLASM 0.978 3.369
RSLQHLSTV 2.693 2.934
RSLVGRTSL 2.745 2.449
RTRTNPTPV 3.108 2.578
RVVVNQDYL 1.877 1.146
SAETNTHGL 2.766 3.310
SAGAPRAFI 3.972 3.194
SAGPALCTM 2.466 3.784
SAISYTDII 3.186 2.189
SALALGHPA 2.425 3.193
SALCTSDVA 3.411 3.526
SALIAERPL 2.946 3.320
SALRSPYPA 2.017 2.397
SALRTGWHM 3.798 2.556
SALWMPDLF 3.480 2.758
SANPNADII 1.127 1.178
SANRLRHLI 2.832 3.017
SAQVMHDPF 3.075 3.308
SARMLGDVM 3.964 3.078
SAVLYPFFL 2.589 2.811
SAVRNDPAA 1.768 2.616
SCAVNEAAM 3.431 2.583
SFYRRTPDF 4.670 4.593
SGGVSPDTL 3.067 3.134
SGPMNLHNL 0.455 1.801
SGVCNLGSV 1.676 2.780
SIPYNYPDM 4.661 3.216
SLLRNDVPM 1.058 1.287
SMYSDCDVL 2.010 2.951
SNLNNLSEL 3.984 2.316
SQLAHLVYV 2.428 2.760
SQLGNAGEV 1.728 3.167
SSFKTFLTV 3.832 3.795
SSLSFLSLI 2.656 3.058
SSNAGLATM 3.875 2.337
SSNKNKNTM 4.163 1.438
SSNTNTTTN 2.438 2.596
SSPSHILTL 1.756 3.122
SSTVSFAEI 3.267 2.520
SSVANIDSL 2.808 0.852
SSVIGVWYL 3.146 2.187
SSVVGVWYL 2.732 1.745
SSVVNVWYL 1.756 0.633
STAVNNMML 3.023 3.336
STHVNPDGV 2.983 2.819
STLQNNSVV 2.428 2.080
STMTLGLSL 2.961 3.680
STNVSIHAI 2.495 3.631
STTTNSGLM 2.640 3.224
STYSNKRAM 4.277 2.644
SVFFNVSVL 1.598 2.671
SVFQMYTRI 2.023 3.245
SWLHLTVPL 3.117 4.066
SWYNIWVNL 4.670 4.558
SYVKNFLLI 3.328 3.180
TAIANQAAI 0.470 0.825
TAILLRDLI 0.283 2.571
TALLLACAV 3.209 3.672
TAPDNLGYA 0.828 4.063
TAPDNLGYM 1.900 2.534
TAVIRFQQL 4.067 4.321
TENILTVLL 4.895 4.531
TIITNREAL 2.203 2.114
TMPYWCPML 3.793 4.498
TMWIGRNPV 3.788 3.731
TNIKSLIPM 3.224 3.436
TRYINWNFI 2.274 3.512
TSDINRTAV 3.002 2.983
TSLINGDNQ 3.496 3.432
TSNEFYNVV 4.670 4.295
TTLLFVVML 4.670 4.340
TVLQNLDVG 3.907 3.323
TVPANGTTV 2.917 2.233
TVYYLSKEV 4.670 4.545
VAACSRLTI 3.684 2.908
VAIAQLTTL 2.125 1.910
VAITFCAII 3.763 3.621
VALAKTVQL 2.997 3.847
VALPNPDPG 4.308 1.870
VALRNTTAF 0.771 1.179
VAMAHADAL 1.772 1.914
VAPCLWAKM 3.014 2.461
VAPSLGVPV 2.020 2.895
VAVCVGVIM 3.708 3.529
VAVIMAIYL 4.527 1.980
VAVKGRFQL 2.947 3.670
VDLCNGDPI 1.969 1.484
VGGLNRDPV 1.161 1.956
VGIGNRDFV 0.805 1.929
VGVIMYSVF 3.965 4.133
VHFIREFHI 4.421 4.568
VIVLCIAAL 3.336 4.332
VKYPKFFFV 3.789 4.565
VLEETSVML 4.694 4.588
VMTSAQITM 1.125 3.744
VNLRNTSPV 1.359 1.723
VPFVVFLVA 4.895 4.606
VQVPNAQLL 0.920 2.715
VQYSNYSFL 0.667 1.296
VSLTNGMSV 1.850 1.654
VSLVSNSFV 2.156 3.207
VSPVYPHGL 4.568 4.425
VSTAVLTTM 3.543 3.688
VTGVKYPKF 4.670 4.569
VTKYNMPPI 2.973 3.066
VVMSQYGVV 4.670 4.366
VVVVNVMTL 1.323 1.752
WALEMADTF 2.506 2.726
WMKMNQTLL 2.117 2.261
YAARLRPVL 3.015 2.907
YAGVNSTAE 3.777 2.927
YAIAHGVAL 2.021 1.766
YAKLSGAFL 2.887 2.949
YALAARGVL 2.097 3.024
YALAVLAHL 2.378 2.765
YALIDGIFL 0.086 1.507
YALTVTQII 3.059 2.774
YAYINSGQL 1.970 1.789
YFYMNKEEV 1.694 2.439
YGAINFINL 1.392 1.961
YGISSKLAM 3.038 2.952
YIIGLLNTI 2.448 3.881
YINWNFIRI 2.409 3.024
YLITNYLPS 3.094 2.856
YLLANNPPP 4.057 3.704
YMAKLHAYL 2.223 2.805
YMLNRIYRF 4.670 4.437
YNYPDMAHM 4.670 3.724
YQHTHKAIL 3.735 3.159
YQPLLSNTL 3.599 3.225
YQTLAFPPI 2.601 3.193
YSALNLTAE 2.546 2.916
YSITEGTTI 2.963 1.692
YSLLFPAPF 4.092 2.527
YSMGPSPPI 3.181 2.944
YSPGKYAPL 2.320 3.188
YSVENVGLL 0.288 1.447
YSVLNTFQA 2.150 2.052
YVPRPDDPV 4.520 3.594
YYLANGGFL 2.863 2.578
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Kb-8.xls 0 → 100644
+ 246
− 0
View file @ a04d49f4
sequence meas pred
AAFEFVYV 1.008 1.647
AFFAFRYV 1.982 2.008
AGLLFVLL 1.131 1.967
AGLQVINL 2.298 2.970
AHICYANL 0.786 1.838
AHWDYLHL 2.109 2.404
AIAPFRHL 0.496 2.604
AKYAFDPM 2.286 2.605
ALYRYLRA 3.560 2.959
ARFCFPGL 1.264 2.576
ASFVFVIL 0.348 1.191
ASPQHSGL 1.579 2.523
ATTLFASV 1.308 2.413
ATYFLAAV 0.682 2.261
AVIRFQQL 1.727 1.315
AVLAFVAL 0.000 1.801
AVSQYCSM 3.125 2.905
CAFVVYNL 2.195 1.948
CSALYRYL 1.517 2.264
CSYMSGYL 1.661 1.761
CTLTFARI 0.845 2.028
DFAFRDLA 5.000 4.488
EMIRYMAL 1.485 2.316
EQYKFYSV 1.026 2.662
ESYAYLCL 0.893 2.541
ETLWYTRV 2.130 3.060
EVVQPENL 4.845 4.211
EVYDFAFR 4.447 3.876
FAPLFTNL 0.000 1.636
FAPRYLTL 0.203 2.210
FAYRFLSR 3.217 2.718
FILHTANL 2.432 2.749
FKFFFHRL 1.820 2.262
FLIAYQPL 1.424 2.304
FNFAYLKV 1.817 2.008
FSILYSVL 0.144 1.689
FSRVYGEV 1.389 2.794
FTMGVLCL 4.845 3.954
FVRDFAQL 0.843 2.021
GAINFINL 0.791 2.126
HIYTFWRL 0.000 1.499
HNLCFSTL 1.155 2.309
HSPAYPTL 1.275 2.700
HTPLFSFL 1.084 2.682
IADKYACL 1.578 2.860
IAESFYDL 2.398 2.500
IALLTNSL 1.936 2.785
ICFTPGNL 1.085 3.012
ICYPVTTL 2.242 2.958
IEMLYPNL 1.423 2.138
IGFILYKV 2.751 2.450
IGLQYAMS 2.024 3.108
IGPLWARL 0.209 1.805
IGYKLTGV 1.217 2.249
IIHILKRL 1.923 2.805
IKLIYRSL 1.912 2.379
ILFLWSFL 2.558 1.952
ILFSYDEL 1.374 2.164
ILQAFAPL 0.408 1.810
ILQMYMSV 2.675 2.584
IMRVCRHL 2.265 2.460
IMSQFRKL 1.048 1.999
INFDFNTI 1.398 1.451
INFDWPFL 1.211 1.667
INLVFQNA 1.877 2.244
INNTFLHL 0.311 1.677
INQLFRVL 0.182 1.926
INWNFIRI 1.710 1.373
INYSALNL 1.916 1.357
IPYNYPDM 2.398 2.264
IRRVYGLL 2.367 2.982
ISAAYKGI 2.162 2.952
ISCLLYDL 1.718 2.755
ISFSFPDG 2.290 2.701
ISRLFATS 1.727 2.987
ISTVHGPM 3.078 2.110
ISYDYSEY 2.424 2.160
ISYGLSTM 2.843 1.636
ISYSSGAI 1.218 2.012
ITHRFFEL 0.807 1.420
ITVYYAVL 0.785 1.522
ITYIYLAH 2.808 2.729
IVLCIAAL 2.249 2.443
IVYLCPVL 1.775 1.693
IVYVPEPM 2.012 2.049
KGFLLTSL 1.574 2.662
KIYYYVMV 0.957 1.555
KQLNYCHL 0.878 2.257
KSFCVTIL 2.387 2.837
KSYILTTL 0.094 1.834
KVVIFILL 1.579 2.211
KVVQYENL 1.479 2.176
LAPVFAFL 0.000 1.973
LFFSVYAL 1.242 2.327
LGYAYINS 1.009 3.012
LGYVYARA 0.197 2.046
LLFVHAGL 2.150 2.123
LLLRFPAL 0.698 2.170
LMLEYQRL 1.217 1.714
LNILHMLL 0.776 2.043
LNRIYRFL 1.717 2.525
LQYAMSLL 1.436 2.354
LQYPYTKI 1.545 2.618
LRRAYAPL 1.832 3.080
LTQLFPGL 0.812 2.159
LTTRYYLL 1.547 1.823
LTTTFRPL 0.969 1.992
LTVLFAIL 2.182 1.873
LVFRFSEV 0.376 1.431
LVLKYDPL 2.070 2.274
LVYDASPL 2.114 1.967
MGYCRARL 1.055 1.978
MGYTYARV 0.000 1.246
MLLAFMTL 0.886 2.312
MSNPFGAL 1.364 2.410
MSYDYPKM 1.133 1.196
MVLNGANL 2.287 2.804
MVSVYQSL 2.048 2.552
NVINYSAL 1.806 2.270
QTFDFGRL 0.328 1.359
RAFDFKQL 0.574 1.806
RAYLYHRR 1.608 2.818
REVYDFAF 5.000 4.322
RGPFFVGL 0.389 2.615
RIYAATNV 1.243 2.630
RNFWLYRL 1.770 1.705
RQYFYMNK 2.681 3.559
RTFETHPL 1.281 2.671
RTLAYARM 0.757 1.764
RTYAPGAL 1.798 2.854
RVAPYAGL 2.418 2.990
RVFVLGSL 1.419 2.422
RVYIYYNH 2.678 2.793
SAFECAVL 1.720 2.414
SAINYALI 1.089 1.791
SFYNFLQR 2.710 2.981
SFYRFFLV 0.089 1.464
SFYRFLFA 1.806 2.803
SGFAFVNA 1.335 2.473
SHFVYTPS 3.483 2.987
SIIQAHNL 0.188 2.534
SIYRYYGA 0.668 1.545
SIYRYYGL 0.041 0.741
SLFSWLHL 1.622 2.285
SLVELTSL 1.591 3.660
SMFASCNL 1.161 1.928
SNFVFAGI 0.000 1.094
SNFVSAGI 1.349 2.566
SNPQYRLV 1.696 2.379
SNRRFLPL 0.000 1.308
SPGKYAPL 1.383 3.084
SPYVFALA 0.901 3.025
SRFFHAEL 0.989 2.832
SRLIFSGL 1.781 2.652
SSAIFRRI 1.164 2.505
SSFITGSV 1.971 2.689
SSFRHWFI 1.637 2.269
SSLSFLSL 0.117 1.349
SSYKLNAV 1.796 2.042
SSYRGFAV 1.329 2.103
STCSYAGL 1.470 2.036
STFEHQKL 0.862 1.908
STIVFASS 2.907 3.037
STRFYNNM 2.850 2.107
SVYRCGEL 1.838 1.640
SVYVAPSL 1.175 1.764
SVYVFHGG 1.509 2.657
SYPQFLAL 2.316 2.398
TAYALAVL 0.716 2.130
TDYYFSHL 0.694 1.496
TGQAFAAL 1.670 2.221
TLREYARL 2.125 2.479
TQIRFPAL 0.916 1.798
TRFIYLAL 1.733 2.495
TSFLYNLR 2.202 2.564
TSFRASSL 1.196 1.613
TSNEFYNV 0.982 2.010
TTANFHTL 2.322 2.567
TTLLFVVM 2.391 2.330
TTPAYSLL 0.692 2.006
TVFGASPL 1.950 2.265
TVFNFAYL 0.000 0.882
VAYLGAFL 0.717 1.705
VEFAYRFL 2.053 2.300
VEHEFGNL 1.736 2.924
VEYLLEQL 1.889 3.028
VFCALARL 0.718 2.913
VFFNVSVL 0.974 2.348
VFQMYTRI 2.228 2.291
VFVILARL 0.053 2.316
VGIDAANL 1.044 2.496
VGLSFDPL 0.923 1.648
VGYQGARV 0.974 2.226
VHTQFALL 0.969 1.822
VIFFFERV 0.270 1.373
VIFNTKPI 2.744 2.412
VLCHYVRV 2.700 3.045
VLFLHLYL 0.000 1.870
VLYPFFLL 0.000 1.340
VMLRWGLL 1.767 1.646
VMRFFGGL 0.824 1.670
VNFDYSRT 0.957 1.875
VPVEFLRL 2.076 2.665
VPYVLALV 1.303 2.846
VSEGFAPL 1.321 1.697
VSERLTRL 2.618 2.873
VSFNFLVA 1.354 2.320
VSFRYEDQ 1.454 2.887
VSLATKRL 1.907 2.542
VSLRRAVL 2.545 2.019
VSLVAGAL 0.912 2.094
VSPHPSPL 1.336 2.665
VSQHAGPL 1.702 2.720
VSRQHAYL 0.542 1.566
VSSAYSRL 0.974 1.567
VSSDYDML 1.864 2.952
VSYVVTYL 0.000 1.096
VTFGWYRL 0.117 1.254
VTFLYHRP 2.278 2.820
VTHPLTPL 2.085 2.640
VTLFSAHL 1.396 2.139
VTLKYARA 0.870 2.224
VTRRFPIL 0.217 1.561
VTWAVRAL 1.564 2.307
VTYLGGDL 1.480 2.224
VVFDFASL 0.000 0.864
VVFTLPVL 1.172 2.115
VVGWFLYL 0.367 1.886
VVIILVFL 3.249 2.590
VVIQHTPI 2.071 2.015
VVMITAAL 1.485 2.184
VVPAHPGL 3.047 2.551
VVVLYSPL 0.582 1.043
VVVNVMTL 2.328 2.412
VVVRPANL 1.418 2.030
VVWALLGL 2.337 2.410
VVYDFLKC 1.880 2.511
VVYNLTGV 0.964 1.832
VYDFAFRD 5.000 4.350
YDFAFRDL 3.602 3.181
YGREFMGL 1.310 2.570
YNFVFSST 1.724 2.335
YRFLFAFL 0.731 2.219
YTYLSRRL 1.068 2.005
YVLHFACL 0.758 2.343
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Kb-9.xls 0 → 100644
+ 314
− 0
View file @ a04d49f4
sequence meas pred
AAACNVATA 4.227 4.301
AAFVNDYSL 3.059 2.419
AAIANQAAV 4.226 3.237
AAIANQAVV 4.717 3.589
AAIENYVRF 3.413 1.711
AAINFITTM 0.417 1.632
AAIPAPPPI 3.939 3.318
AAKLNRPPL 4.175 2.623
AALDMVDAL 3.417 3.175
AALQHLRSI 2.845 3.395
AALVRLTAL 1.493 1.940
AAMVPTGSL 3.409 3.296
AANSPWAPV 2.854 2.683
AAPSGAAPL 2.300 3.259
AAPVSEPTV 3.399 3.560
AAVANGFAA 4.433 4.222
AAVLLGAPV 3.602 2.932
AAVQLLFPA 4.419 3.724
AAVTAGVAL 3.909 3.483
AAVVNRSLV 4.326 2.887
AAYVPADAV 3.026 3.110
ACMVNLERL 1.998 3.239
ADLVNHPPV 4.042 3.484
AEMEEALKG 4.891 4.552
AGLDNKFYL 3.794 3.424
AGLVSFNFL 2.197 2.995
AGTINHPAI 3.697 3.838
ALMRNLNSL 3.576 3.421
ALVSNRVTL 2.622 3.486
AMCTNTFVL 3.215 3.839
AMFHNGRVV 4.110 3.155
AMLCGFSPA 2.621 3.166
AMNKFTQTI 3.282 2.560
AMPADFCAI 3.702 3.724
ANYNRWPYI 1.928 1.350
AQLMPSPPM 2.854 3.089
AQLVDDFTL 3.165 4.212
ARIVNSVFV 3.273 4.125
ASIIALVFL 2.204 3.303
ASLTSFAAI 1.718 2.580
ATVRSTLPI 4.194 3.565
AVCINNTFL 3.042 4.191
AVLTNALLL 3.223 3.295
CAVINTVCA 4.669 4.274
CLLCNLLLV 2.820 3.973
CNLTDQTEI 4.316 4.182
CSFHNRVTL 3.018 1.854
DAVRNTNEA 4.669 4.399
DQIENIAKL 3.676 4.133
EAFLNFTSM 3.157 2.034
EAIALLDTV 4.160 4.083
EANIDIDPM 4.327 4.275
EGPRNQDWL 4.845 4.337
EGSRNQDWL 4.723 4.421
EMVLNGANL 4.020 3.310
EVYDFAFRD 4.580 3.683
FAATSREAL 4.239 3.916
FAFVNAAHA 3.397 3.076
FAHVALCAI 2.900 3.506
FAILVVSLL 2.187 2.959
FALLKRAFL 2.031 2.669
FAPLRTSLL 1.169 2.334
FAVELIATL 2.969 2.732
FGLLNYALV 1.017 2.468
FLDTNTDAM 4.669 4.345
FLPRLGTEL 4.203 4.112
FLRMNLNPL 2.960 3.007
FMDGTMSQV 3.126 3.987
FMFVNGALT 3.939 2.867
FMVSSIDEL 3.568 3.281
FNLQSIIPI 3.868 3.105
FQAGNWASL 3.104 3.612
FQQLNKRLL 3.954 3.925
FSLFNPRDL 2.222 3.738
FSRRNATGL 3.697 3.335
FSTRFYNNM 2.423 1.388
FTQKSLFPI 3.403 3.754
FTRSNVIVI 4.223 3.892
FVVMLIIIM 4.228 3.103
GALRLGAVM 4.149 3.836
GALVNASSA 3.195 4.331
GAMRAVVPI 4.298 3.608
GAPRNRELF 3.973 4.029
GEEVQVIAV 4.891 4.513
GSYCNTLSL 3.228 3.258
HALLNATTY 3.989 4.105
HALVSGVPL 4.002 3.157
HATANVAEL 3.783 3.932
HGLRNSQFV 4.757 4.199
HTIQNGDYF 4.891 3.965
HYYTNGYYV 4.503 3.251
IAESFYDLF 2.664 1.744
IALLDTVAV 3.831 3.657
IAVTPRPPI 3.806 2.535
IGFILYKVL 2.410 1.959
IGLLNTIMV 2.772 3.357
ILHRWYEHM 3.101 1.771
IMLSSKAIM 3.326 2.371
IMRRNGLAI 2.653 3.245
INLVFQNAI 0.889 1.695
INYSALNLT 2.743 2.386
IQNTNSPSV 3.077 3.972
ISFSETNAL 2.733 2.196
ISLTVWIPM 3.279 1.746
ITYNKITTL 1.953 1.429
IYRSFYRRT 2.240 2.165
KAILSSVAL 3.475 3.210
KAIMRRNGL 2.185 1.758
KIIRNRGHM 4.262 2.808
KMVAPATYL 3.458 3.509
KSYILTTLL 1.571 1.964
KVGSNIEEI 2.770 4.161
KVPRNQDWL 4.070 3.942
KWLKYCIEL 2.831 2.654
LALVAAFAL 3.348 3.219
LAMSPRTSI 3.205 3.391
LAPNNVSEL 3.465 3.315
LAPVPKTPL 3.241 2.790
LARFNPDAV 2.987 4.034
LATNNSQFI 4.891 4.104
LAVVLWSLL 3.444 1.762
LGLSNKLPV 3.780 3.250
LNFLHRLSV 0.395 2.278
LNLVNRRAV 3.709 3.263
LPQFATAAT 4.891 4.515
LQTDNYTLM 3.374 2.954
LSILLRDWL 3.667 2.867
LSLGDLDTI 4.095 4.180
LSLNFLHRL 1.268 1.708
LSLTNCPNF 2.364 2.865
LSPSNRRFL 3.286 3.707
LSRFNANYV 3.410 3.748
LSSVNADTL 4.101 3.868
LSVLSPNFI 4.062 3.881
LTAKNLASL 0.976 3.509
LTTANFHTL 3.598 3.284
LTVFNFAYL 1.305 2.028
LTVINRLQL 3.796 3.129
LVIFNTKPI 4.127 3.199
LVYVIQLPL 2.332 2.087
MMVENLTLL 0.901 2.229
MQLRNTCPL 3.179 3.180
NALLLGVFL 4.251 3.911
NALTNDGPT 4.086 4.230
NAVRLRHPL 4.092 3.270
NDVSNKDSL 4.044 4.385
NELVNPDVV 4.891 4.459
NIWVNLNNL 2.938 3.104
NKNLNKSYI 4.160 4.363
NLLNNYDVL 4.891 3.889
NMLNNLIDA 4.669 4.209
NNVINYSAL 2.570 2.401
NSVKNSSSF 4.669 3.901
NVTRNPTHL 4.352 4.012
NYITNPANL 3.654 3.714
PAARNGDAL 4.089 4.190
PSAINYALI 2.477 3.178
PTMPYWCPM 3.239 1.971
QATTNKATL 3.244 3.271
QIVRNDPPL 3.321 2.699
QMLPPTDPL 3.154 3.063
QMYVNRNEI 3.461 1.853
QSGLYRYHM 2.667 2.089
QSLFSWLHL 2.177 2.386
QSLVGTYVI 4.188 3.850
QVMLRWGLL 1.345 1.485
RAFLKQHPL 2.006 2.014
RAILNAPVA 4.634 4.145
RAKYAFDPM 4.313 2.772
RALLLYVNI 3.752 2.684
RAPQNRPSV 4.162 3.870
RAQANDGFI 3.516 4.392
RATCSAAYL 3.182 4.091
REVYDFAFR 5.000 4.538
RGLCGLDEL 4.219 4.236
RLLLNRFTM 4.845 3.692
RQLALLASM 3.512 3.852
RSLQHLSTV 1.483 2.958
RSLVGRTSL 3.551 3.460
RTRTNPTPV 3.161 3.834
RVVVNQDYL 3.620 3.351
SAETNTHGL 3.678 4.029
SAGAPRAFI 2.955 4.068
SAGPALCTM 3.299 3.521
SAISYTDII 1.474 2.897
SALALGHPA 4.042 4.079
SALCTSDVA 4.376 4.348
SALIAERPL 1.956 2.784
SALRSPYPA 3.893 3.933
SALRTGWHM 4.135 3.567
SALWMPDLF 2.558 3.064
SANPNADII 4.529 4.156
SANRLRHLI 4.256 3.567
SAQVMHDPF 3.968 2.474
SARMLGDVM 4.750 3.639
SAVLYPFFL 2.504 2.972
SAVRNDPAA 3.626 3.986
SCAVNEAAM 4.354 3.592
SFYRRTPDF 2.055 2.075
SGGVSPDTL 2.455 4.147
SGVCNLGSV 3.322 3.980
SIPYNYPDM 2.952 2.169
SLEVELTSL 1.568 4.329
SLLRNDVPM 3.795 3.236
SMYSDCDVL 3.226 2.958
SNLNNLSEL 3.216 2.667
SQLAHLVYV 2.234 3.467
SQLGNAGEV 3.285 4.227
SSFKTFLTV 1.781 2.006
SSLSFLSLI 0.710 1.719
SSNAGLATM 4.669 3.421
SSNKNKNTM 4.669 3.075
SSNTNTTTN 4.475 4.329
SSPSHILTL 1.207 2.501
SSTVSFAEI 2.357 2.970
SSVANIDSL 3.126 3.491
STAVNNMML 3.243 3.698
STHVNPDGV 4.302 3.717
STLQNNSVV 3.311 3.992
STMTLGLSL 2.948 3.264
STNVSIHAI 4.246 4.014
STTTNSGLM 4.372 3.465
STYSNKRAM 2.930 2.094
SVFFNVSVL 2.242 2.516
SVFQMYTRI 1.570 1.369
SWLHLTVPL 1.942 2.311
SWYNIWVNL 2.124 1.392
SYVKNFLLI 3.267 2.760
TAIANQAAI 2.319 3.004
TAILLRDLI 2.760 2.944
TALLLACAV 3.403 3.424
TAVIRFQQL 1.760 1.428
TENILTVLL 4.891 3.995
TIITNREAL 3.884 3.064
TMPYWCPML 1.791 1.579
TMWIGRNPV 3.009 2.311
TNIKSLIPM 3.659 2.182
TRYINWNFI 2.912 2.874
TSDINRTAV 2.756 3.779
TSLINGDNQ 4.249 4.286
TSNEFYNVV 2.072 1.828
TTLLFVVML 2.528 2.042
TVLQNLDVG 4.531 4.361
TVPANGTTV 4.891 3.875
TVYYLSKEV 1.443 2.392
VAACSRLTI 2.563 3.790
VAIAQLTTL 1.789 2.258
VAITFCAII 1.875 1.828
VALAKTVQL 1.806 2.284
VALPNPDPG 4.533 4.073
VALRNTTAF 3.221 2.425
VAMAHADAL 2.767 2.317
VAPCLWAKM 1.220 2.060
VAPSLGVPV 2.184 2.718
VAVCVGVIM 3.376 3.500
VAVIMAIYL 3.676 2.440
VAVKGRFQL 3.709 2.821
VDLCNGDPI 3.780 4.117
VGGLNRDPV 4.674 3.290
VGIGNRDFV 4.013 3.828
VGVIMYSVF 2.313 2.285
VHFIREFHI 2.024 1.895
VIVLCIAAL 3.063 2.207
VKYPKFFFV 2.329 2.425
VLEETSVML 1.968 4.194
VMTSAQITM 3.377 2.640
VNLRNTSPV 1.989 2.206
VPFVVFLVA 4.891 4.154
VQVPNAQLL 3.776 3.353
VQYSNYSFL 0.033 1.418
VSLTNGMSV 3.065 3.285
VSLVSNSFV 2.436 3.625
VSPVYPHGL 0.487 2.338
VSTAVLTTM 3.487 3.268
VTGVKYPKF 2.637 1.825
VTKYNMPPI 3.540 2.608
VVMSQYGVV 2.690 2.262
VVVVNVMTL 2.075 2.373
VYDFAFRDL 3.708 3.579
WALEMADTF 3.107 3.727
WMKMNQTLL 3.319 3.076
YAARLRPVL 4.010 3.547
YAGVNSTAE 4.891 4.155
YAIAHGVAL 3.432 2.800
YAKLSGAFL 3.645 4.047
YALAARGVL 3.387 3.758
YALAVLAHL 2.235 3.042
YALIDGIFL 3.664 4.125
YALTVTQII 3.935 3.958
YAYINSGQL 1.463 2.240
YDFAFRDLA 4.748 4.056
YFYMNKEEV 4.080 3.307
YGAINFINL 0.000 3.154
YGISSKLAM 4.891 3.576
YIIGLLNTI 1.837 3.424
YINWNFIRI 1.857 2.757
YLITNYLPS 4.545 3.936
YLLANNPPP 4.254 4.415
YMAKLHAYL 2.890 2.728
YMLNRIYRF 2.896 1.867
YNYPDMAHM 2.866 2.658
YQHTHKAIL 4.153 3.367
YQPLLSNTL 4.040 3.701
YQTLAFPPI 2.602 3.399
YSALNLTAE 3.587 4.185
YSITEGTTI 3.543 3.924
YSLLFPAPF 2.125 1.867
YSMGPSPPI 2.787 3.107
YSPGKYAPL 0.167 1.594
YSVENVGLL 3.380 3.108
YSVLNTFQA 3.735 4.032
YVPRPDDPV 3.761 4.120
YYLANGGFL 4.044 3.992
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Kd-10.xls 0 → 100644
+ 104
− 0
View file @ a04d49f4
sequence meas pred
ADILAALTKL 2.863 4.283
AFSSQELASL 2.500 4.153
AFSSQGRGSL 4.854 3.669
AYILAALTKL 1.841 2.270
AYIPPSHSRL 3.616 2.015
AYITTSHSRL 1.861 1.550
CDTCNILCGI 3.772 4.440
CYLEGDQPSL 2.838 3.044
CYLEGDQTSL 3.129 2.113
CYLVFIGCSL 3.075 2.526
CYLVFIGWSL 1.223 2.500
CYTCNILCGI 2.254 3.024
DCTMLLLSQL 4.839 4.368
DDIIEFAHRV 2.816 4.524
DDVPMEQPRP 4.149 4.543
DFKPSYGTPA 4.157 4.507
DFKPSYGTPV 2.280 4.208
DYIIEFAHRV 2.268 3.705
DYTMLLLSQL 4.759 2.535
DYVPMEQPRP 4.766 3.940
EFLNLVMETL 2.906 3.836
ELQGLLEDEL 4.854 4.458
ELQGLLEDER 3.364 4.582
EVLNLVMETL 3.404 4.329
EYFPMQVVTL 3.155 2.311
EYFPMQVVTR 4.854 3.760
EYLESRMSFI 1.435 2.106
EYVESRMSFI 2.030 2.305
FCQLAKTCPV 4.553 4.470
FFQLAKTCPV 0.732 3.998
FYAAEVTSAL 1.859 2.370
FYAAEVTSTL 1.914 2.163
GDSVLHLAII 3.288 4.446
GDVRPKSSSL 4.086 4.255
GFHGCIHEVL 4.479 4.261
GFHGCIHEVR 4.854 4.542
GFIGSQKGNI 2.896 3.634
GHVRPKSSSL 1.011 3.357
GLIGSQKGNI 4.330 4.246
GYSVLHLAII 3.682 3.443
HDLQGSNAPP 3.388 4.534
HFQTIFAAAL 2.894 3.971
HFQTIFAAAQ 4.854 4.481
HYLQGSNAPP 4.201 3.885
HYLQYKQEDL 3.327 3.023
IDGVVARNRA 1.758 4.552
IYAGQMAVLG 3.981 4.269
IYAGQMAVLV 1.111 3.793
IYDVIVEPPS 3.673 4.408
IYGVVARNRA 2.758 3.994
IYLLSGITGI 1.952 2.397
IYLLSGITGN 2.632 3.909
IYYCMLCGDL 3.252 2.315
KDMSMLEERI 3.407 3.789
KYMSMLEERI 2.003 1.662
LDEAGVTDEV 4.478 4.498
LDMLQALCIP 3.012 4.568
LDVKKKIKEV 4.453 4.557
LDVSKLNGPV 4.538 4.500
LYEAGVTDEV 1.984 3.188
LYIIHKQAPL 3.723 3.217
LYIIHKQAPP 3.829 4.200
LYVKKKIKEV 2.498 3.886
LYVSKLNGPV 2.495 3.328
MCNAVDEFLL 1.391 4.483
MYNAVDEFLL 4.854 3.462
PALKSEEKTL 4.586 4.354
PALKSEEKTP 4.854 4.514
PDKRLKAEPA 1.744 4.578
PDLTQYAIIM 3.693 4.553
PDLVLKFGPV 1.967 4.515
PYKRLKAEPA 2.756 4.340
PYLTQYAIIM 3.524 4.137
PYLVLKFGPV 3.043 3.390
QYLQYKQEDL 4.458 3.043
RFLLQLVGIL 4.854 4.279
RYVLQLVGIL 4.223 3.532
SDCEPALNQA 4.854 4.556
SDLPNNFSIS 3.441 4.521
SDRLPSSRKK 3.515 4.575
SYCEPALNQA 2.328 3.979
SYDVIVEPPS 2.552 4.270
SYLPNNFSIS 3.037 3.693
SYMLQALCIP 1.464 3.879
SYRLPSSRKK 3.307 4.265
SYSYDSSEVI 3.320 2.702
SYSYDSSEVS 3.845 4.107
SYWLGRTELL 0.579 2.452
SYWLVRTELL 2.333 2.180
THQHSPISPL 2.755 3.751
THQHSPISPR 4.854 4.494
TYHTTSAVTV 1.656 2.534
TYIRPFETKV 3.078 3.091
TYIRPLETKV 1.386 2.764
TYNTTSAVTV 2.269 2.590
TYVMRAGLNA 1.296 4.260
TYVMRAGLND 4.854 4.337
VYFQSRKKSG 4.854 3.392
VYFQSRKKSV 2.027 2.225
WYNSPSQPLT 2.857 4.144
WYNYPYQPLT 4.854 4.185
YYLPNKNQML 3.042 2.105
YYLPNKNQMV 1.952 2.479
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.H-2-Kd-9.xls 0 → 100644
+ 127
− 0
View file @ a04d49f4
sequence meas pred
ADAKQFAAI 4.886 4.180
ADDVEEYMI 4.612 4.556
ADRLEGDRS 4.613 4.588
AHASPGPPL 2.056 4.396
AHAYPGPPL 4.854 4.478
AHMSEEEQF 4.854 4.387
ALKSEEKTL 4.870 4.435
ALKSEEKTP 4.886 4.572
AYAKQFAAI 0.623 1.565
AYCETCWEL 1.628 1.272
AYCETCWEW 1.540 3.523
AYDGEEYMI 4.050 4.147
AYLVFGTQV 1.803 2.675
AYLVFRTQV 3.280 1.935
AYMSEEEQF 2.174 3.923
AYRLEGDRS 4.886 4.463
CDYLVGEER 4.854 4.572
CYAKLKEQL 0.194 1.500
CYAKVKEQL 1.144 1.305
CYQCPFQPL 2.501 1.837
CYQCTFQPL 2.152 0.777
CYWSPLSHL 1.918 1.714
CYWSPLSHP 1.331 3.845
CYYLVGEER 3.113 4.194
DDVPMEQPR 4.517 4.540
DYSRFEDRL 4.035 3.979
DYSRFEDWL 4.456 3.917
DYVPMEQPR 4.350 3.606
EDLDLQTQG 4.886 4.582
EGPRNQDWL 4.854 4.544
EYEWCGQKL 3.162 3.951
EYEWCGQKR 4.157 4.506
EYLDLQTQG 3.731 4.362
EYLTAEILE 4.300 4.468
EYLTAETLE 2.331 4.068
FFCSGCSTT 3.571 2.719
FLCSGCSTT 3.215 3.935
FYRTIARGL 4.762 2.421
FYRTIAWGL 3.406 2.000
GDSVLHLAI 3.801 4.367
GFLVKNFPV 4.635 4.202
GFVSPDTEL 1.961 4.024
GSVSPDTEL 4.854 4.404
GYFTSRPFY 4.854 3.891
GYIGSHTGL 0.977 0.996
GYIGSHTVL 2.013 0.979
GYSVLHLAI 0.979 1.987
HDLQGSNAP 4.116 4.509
HYGVRTCEG 4.092 4.448
HYGVRTCEV 3.987 3.811
HYINMILPI 0.489 1.411
HYINMSLPI 0.984 1.354
HYLQGSNAP 3.251 3.409
HYLSAILRL 1.972 2.763
HYLSSILRL 2.827 2.512
IYDVIVEPP 4.854 4.407
KDMSMLEER 4.577 4.462
KHIPYREHK 4.854 4.406
KYFLDNLDL 3.397 2.471
KYFLDNLDR 3.803 4.219
KYIHSANVL 0.000 1.253
KYIPYREHK 2.815 3.444
KYKDSTSVL 2.092 1.829
KYKGSTSVL 1.883 1.004
KYMSMLEER 1.674 2.678
KYREGKSRR 3.134 3.612
KYREGKYRR 3.145 4.368
LDEAGVTDE 4.141 4.511
LDHTRPTAL 4.886 3.964
LDMLQALCI 3.043 4.500
LDVSKLNGP 4.886 4.583
LWVLGCFSL 1.967 3.990
LWVLGCSSL 3.994 2.621
LYEAGVTDE 4.443 3.348
LYFNYIASL 3.903 3.303
LYFNYIASW 4.276 4.266
LYHTRPTAL 1.830 1.014
LYVSKLNGP 4.222 4.382
MCNAVDEFL 3.511 4.236
MDVISDNHL 4.886 4.399
MYNAVDEFL 2.939 1.491
MYVISDNHL 2.032 2.065
PDLTQYAII 2.955 4.522
PYLTQYAII 1.699 3.579
QVFPGLMEL 4.607 4.293
QVFPGLMER 3.766 4.557
QYIHSANVL 1.547 1.937
RFLLQLVGI 4.346 4.030
RYFCTEKDL 1.775 2.370
RYFCTEKDR 3.261 4.289
RYGWGGGEM 2.242 3.121
RYGWWVGEM 4.737 3.881
RYVLQLVGI 3.326 2.894
SCATYSEAL 4.168 4.190
SDLPNNFSI 3.727 3.507
SEDKIKAIL 4.677 4.457
SEDKIKAIP 3.581 4.574
SFATYSEAL 1.807 3.424
SYDSCARLT 2.145 4.345
SYDSCDRLT 3.559 4.401
SYDVIVEPP 4.389 4.152
SYKHLFQPV 3.594 1.530
SYKPLFQPV 1.658 1.005
SYLPNNFSI 2.455 0.651
SYMLQALCI 2.056 1.652
SYQEMIANL 2.114 0.981
SYQEMIATL 1.863 0.613
SYWLGRTEL 0.977 0.761
SYWLVRTEL 4.269 0.650
TFCPTGSPI 1.895 1.534
TFCPTGSPL 4.737 1.911
TYGRGTENI 1.371 2.397
TYGSGTENI 1.939 2.193
TYVEEITAL 4.854 2.245
TYVEEITDL 2.147 2.973
VFLVKNFPV 4.439 4.194
VYDIVNNLG 4.854 4.286
VYDIVNNLV 4.175 3.264
VYREQAETC 3.728 4.256
VYREQAETF 3.193 4.238
WYKGMYSTI 0.822 0.511
WYKGVYSTI 1.961 0.558
WYNSPSQPL 1.170 2.016
WYNYPYQPL 2.028 2.175
YLLSGITGI 2.781 3.328
YLLSGITGN 4.854 4.490
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0101-10.xls 0 → 100644
+ 218
− 0
View file @ a04d49f4
sequence meas pred
ALGKSEFQIY 3.188 3.667
ARGITMIPHY 4.134 3.902
ASEAVNDSRF 4.498 3.496
ASLVMLLVHY 3.264 2.956
ASVKKDLISY 4.578 3.549
ATLLAVSGVY 3.693 3.357
ATPYDINQML 4.848 4.340
ATVTGGIFLF 3.310 3.982
AVIWYDGSNK 4.719 4.450
AVNPGLLETS 4.258 4.455
CIAIGIITLY 3.872 3.159
CIAVGLVTLY 2.903 3.174
CIAVGMVTLY 3.142 3.005
CIVIGIITLY 4.848 3.781
EAEPPFGDSY 3.248 3.501
EAEPPFGESY 3.135 3.589
EKSAAIDGEY 3.384 3.721
ELEPPFGDSY 2.070 3.334
ELFARSSDPR 4.301 4.360
ELVNQIIEQL 4.848 4.384
ESEIPNLDII 3.857 4.057
ESEKNETWKL 4.265 4.143
ESEMIIPKIY 3.793 2.476
ESEMIIPKNF 4.848 4.078
ESQMLIPKAY 4.595 2.963
ESQMLIPKSY 3.923 3.180
ESSKNQTWQI 4.848 3.989
ETENILTVLL 3.585 3.949
ETEPPFGESY 0.723 2.380
ETFGFEIQSY 2.310 3.186
ETFSMGLLCL 3.865 3.966
ETSWHYDQDH 4.848 3.621
ETWALRHPGF 4.615 4.154
FALLAGFMAY 4.131 3.593
FAVNPGLLET 4.481 4.375
FIRTSLSLDY 3.395 3.186
FKRKGGIGGY 4.848 4.253
FLEFEALGFL 3.510 3.805
FSQHNYRQGY 2.324 2.169
FSSYGMHWVR 4.848 3.983
FTAGGEPCLY 2.183 1.953
FTEENQWDSA 2.295 3.298
FTIMAAILAY 2.989 1.909
FTLMAAILAY 2.803 2.058
FTMAHRKPTY 3.962 2.929
FTMKHKKATY 3.684 2.863
FTMRHKKATY 3.102 2.783
FTQTAGPWHL 4.372 3.657
FTTRHRKPTY 4.373 3.136
GLEWVAVIWY 3.644 3.259
GLFSSDLKKL 4.848 4.387
GLFTNSSGTQ 4.848 4.401
GMFTDRSGSQ 4.848 4.442
GMFTNRFGSQ 4.848 4.424
GMFTNRLGSQ 4.848 4.399
GMFTNRSGFQ 4.848 4.387
GMFTNRSGSQ 4.848 4.436
GMFTNRYGSQ 4.848 4.417
GTDAPCKIPF 4.651 3.924
HIMLVSLDTV 4.673 4.306
HKFSNSNIYK 4.848 4.418
HTAEAGGRAY 4.848 2.379
HTQTAGPWHL 4.848 3.898
HTSEHGGRAY 3.013 2.276
HTTERGGKAY 3.635 2.843
HTTERGGRAY 2.162 2.760
HVSSWEEVPY 2.901 2.867
IISSTPFAEY 3.537 2.782
IITASILLWY 1.969 3.086
ILCSLMEHWA 4.848 4.366
ILGAQALPVY 4.848 3.308
ILPEEQDQNY 4.589 3.446
ISKIPGGAMY 4.377 3.714
ISKIPGGNMY 4.445 3.793
ISQHNHRPGY 4.177 3.087
ISQHNYRPGY 4.049 2.889
ISRDNSKNTL 4.848 4.333
ITEMGRLPTF 4.244 3.704
ITLTAALLLL 3.774 3.977
ITMIPHYYYY 0.887 2.506
IVDCLTEMYY 1.222 1.875
IWYDGSNKYY 4.437 3.649
IYHPQQFVYA 4.848 4.422
KGAGTGGLGL 4.848 4.436
KGFSEEHNTW 4.677 4.446
KGFTDADNTW 4.386 4.422
KITTESIVIW 4.131 4.334
KLHSGVDVFY 3.459 3.638
KLMSGKDVFY 3.172 3.450
KPAVSSDSDI 4.848 4.437
KSLTTTMQFK 4.301 4.303
LAEAIFKLTY 3.182 2.731
LALITVSGLY 4.105 3.567
LIGKEEYVDY 3.898 3.613
LIGNEEFLDY 3.225 3.065
LIGNEEYTDY 3.030 3.365
LIGNENYLDY 3.784 2.907
LLIVSGIFPY 3.875 3.479
LLSPVRVPNY 4.179 3.403
LLSSTRVPNY 3.354 3.002
LRLSCAASGF 3.041 4.324
LSDDISEDTV 2.316 3.371
LSIPHDLMEF 4.559 3.918
LSLSLGAHQK 4.780 4.306
LSRKTFDSEY 3.261 2.883
LSRKTFDTEY 2.702 2.875
LSRNSTHEMY 2.465 2.911
LTAIANQAAI 4.009 4.074
LTDFGLSKIM 3.278 3.768
LTDFQPHQLW 3.263 2.925
LTDFQSHQLW 3.567 2.657
LTDGEERVIL 4.374 3.924
LTDGPERVIL 4.074 4.063
LTEFQPHQLW 4.114 3.460
LTEIASLPTY 0.144 1.562
LTGGVTLFFL 3.944 3.916
LTLTAAVLLL 4.144 4.012
LTLTAAVLML 3.790 4.095
LTPPVSDLKY 2.751 2.264
LTPQPMELKY 2.969 2.948
LTSSQQKADW 4.045 3.715
LVSDGGPNLY 2.601 2.721
MSYSMCTGKF 4.257 3.844
MSYTMCSGKF 3.888 3.883
MTDDIGMGVT 3.054 3.304
MTGTLAVFLL 4.540 3.916
MTIDLDPVIY 3.477 2.328
MTSRMLLNRF 4.092 3.294
NIYKTRHTGI 4.848 4.394
NTATTVLLDE 4.848 3.990
NTGFDWITDY 2.762 2.114
PSVEVKLPDY 3.876 3.164
PTSEIQLTDY 2.407 1.636
QLIPCMDVVL 4.848 4.371
QLSKSEFNTY 3.145 3.566
QLSRKEFDLY 3.083 3.156
QTGIQRTVFF 4.848 3.929
RGPYRAFVTI 4.848 4.470
RILHNFAYSL 4.848 4.391
RSCTLPPLRY 0.767 2.684
RTPQDNQLAY 2.847 2.790
RTPQDNQLIY 2.963 2.858
RYPLTFGWCF 4.848 4.370
SGGPKYEYRW 4.848 4.430
SGPSNTYPEI 4.034 4.413
SIGKMFESTY 4.233 3.869
SILLMTVTSI 4.254 4.413
SILYKDDMGV 4.848 4.377
SIPATLFVWY 4.313 3.731
SIPITAAAWY 4.760 3.632
SITEAELTGY 2.593 3.243
SLDRKEFEEY 3.023 2.372
SLMASSPTSI 4.301 4.330
SLMEHWALGA 4.635 4.279
SMANIFRGSY 3.512 3.447
SSSMRKTDWL 4.697 4.058
STANIFRGSY 3.061 2.526
STANVSLAAI 4.680 3.918
STDGPERVIL 4.273 4.136
STESHNQTFL 4.060 3.716
STSLSVSLVL 4.081 4.003
STTEAILPEY 2.367 2.216
STTVKAACWW 4.848 4.191
SVKGRFTISR 4.848 4.447
SYAQMWTLMY 3.138 3.587
SYMMDDLELI 4.301 4.321
TILALFLAHY 4.250 3.190
TLYLQMNSLR 3.972 4.303
TSETFSMGLL 2.385 3.527
TSITQKGIIF 3.867 4.018
TSLTQKVVIF 3.953 4.029
TTANWLWALL 4.090 3.865
TTLTASLVML 3.022 4.066
TTSGTYVSAI 4.848 3.958
TTSKMLLNRF 4.668 3.620
TVIDLDPIPY 3.189 3.356
TVIDLEPIPY 3.543 3.439
TVIDLEPISY 3.924 3.568
TWEAWWTEYW 4.290 4.116
VAGGLLIACY 3.472 3.533
VAGGLLTVCY 4.569 3.580
VAIDLDPVVY 4.524 3.493
VDVCGMFTNR 4.762 4.454
VHPVHAGPIA 4.848 4.467
VLDDGIYRIL 4.848 4.205
VLEENMDVEI 4.668 3.980
VLMMLVAPSY 3.004 3.480
VLPEEQDQNY 4.044 3.309
VPTKLSPISI 4.848 4.453
VSETQHGTIL 4.848 4.009
VSKKEGGAMY 4.299 3.454
VSLTCSNTIF 3.890 3.868
VSQHNYRPGY 3.832 2.688
VSSVNMVSRL 4.032 4.067
VSSWEEVPYL 4.095 4.045
VTAETQNSSF 4.211 3.464
VTAKWLWGFL 4.249 3.971
VTARWLWGFL 3.938 3.916
VTDKEKPVNI 4.192 3.971
VTEEIAVQNW 4.588 3.851
VTEKDSPVNI 4.613 4.105
VTIDLDPVVY 3.105 2.648
VTTWEDVPYL 4.009 4.073
VTTWENVPYL 4.055 4.076
VTYLALIATF 4.706 3.959
VTYLALLAAF 4.173 3.776
VVIPMLNPFI 3.335 4.377
VVQPGRSLRL 4.848 4.377
WVNCSSMTFL 3.196 3.985
WVRQAPGKGL 4.848 4.438
YFEYIEENKY 3.194 3.657
YLDWHAGHAW 4.575 3.878
YLKEEQDQQY 4.195 3.027
YSDPLALKEF 1.171 2.836
YSDPLALREF 1.329 2.809
YTNGTIRTAY 1.292 2.040
YYRYPTGESY 4.301 4.155
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0101-9.xls 0 → 100644
+ 480
− 0
View file @ a04d49f4
sequence meas pred
AALEGLSGF 3.699 4.393
AALQGGGPP 4.848 4.439
AARAALQGG 4.848 4.455
ADKNLIKCS 4.121 4.477
ADVRALGGL 4.848 4.411
AEFKYIAAV 4.195 4.385
AFFAERLYY 4.301 4.229
AGVWSQDKW 4.719 4.457
ALDISFTGA 3.699 3.849
ALITVSGLY 3.910 3.517
ALQGGGPPY 4.550 4.027
AMEDLVRAY 4.000 3.309
APERQRLLP 4.848 4.424
APPHGGIAF 4.301 4.416
ARAALQGGG 4.848 4.443
ASDRMGMGV 3.138 2.360
ATADLELAY 1.362 1.128
ATEMGLLET 3.846 3.575
ATFRLECPY 1.462 2.759
ATLKMRPMF 4.893 4.328
ATLRLPEDI 4.146 4.320
ATSIFKLTY 3.037 1.319
AVHGYYIGY 2.790 4.012
AVNPGLLET 4.238 4.365
AVSASPLLL 4.246 4.031
AYHPQQFIY 4.848 4.306
AYKKQFSQY 4.301 4.427
CAKFQCLEF 3.771 4.307
CGSFCRLGY 4.848 3.469
CIAIGIITL 4.848 4.319
CIDFYSRIR 2.908 4.209
CSDSDGLAP 4.301 2.719
CSDSKLIGY 0.932 0.651
CSHHFHELV 4.371 3.541
CTGKFKVVK 4.893 4.263
CTNTFVLKK 3.707 3.676
DEHLRGFSK 4.893 4.452
DEHLRGFSM 4.893 4.438
DHQAAFQYI 4.893 4.387
DIEITCVYC 2.704 4.413
DQQEAARAA 4.848 4.440
DTAVYYCAR 3.837 4.196
DTGCRIDGY 2.911 3.313
DTRGIFSAY 4.301 3.672
DTSEVHWNY 2.792 1.675
DVCGMFTNR 4.729 4.427
DYPYRLWHY 4.848 4.403
EAARAALQG 4.848 4.420
EADVRALGG 4.848 4.201
EDFEIFYNL 3.699 4.385
EEMNLPGRW 4.893 4.440
EFKQILTDF 4.301 4.422
EGAGIDDPV 3.699 4.359
EGFDPRALI 3.699 4.404
EIAQHGAWY 3.281 3.657
EIYRTLYGL 3.632 4.372
ELAPIRVNA 3.699 4.372
EPFSRRHPL 3.514 4.370
ERAFQNWSV 3.699 4.328
ERVRELAVA 4.848 4.413
ERYFRIHSL 4.893 4.351
ERYFRINSL 4.893 4.366
ESEMIIPKI 4.628 4.182
ETIEILRNY 3.557 3.898
ETMETLLLL 4.061 3.784
ETNMITLLV 2.530 2.226
ETVWPFFYA 3.699 4.219
EVDDYGFGM 4.476 3.614
EVDSFSLGI 3.869 3.696
EVDSFSLGL 4.023 3.654
EVIRATYPS 3.699 4.429
EVRKAIEFV 3.699 4.375
EVVDMLSTY 3.512 4.160
FFGETSHNY 4.301 4.159
FFSPFFFSL 3.699 4.253
FGALFMWLL 3.699 4.211
FIDGISLGL 3.101 3.771
FKDLFVVYR 2.867 4.357
FLGEDGCWY 2.444 3.184
FMVYVPLPA 3.699 4.115
FNCGGEFFY 1.756 3.944
FPFLYKFLL 4.702 4.327
FPHTELANL 4.301 4.424
FPQGKAREF 4.893 4.435
FPYSTFPII 4.893 4.337
FQILHDRFF 4.301 4.323
FRYNGLIHR 4.456 4.422
FSFPQITLW 4.893 4.147
FTALVAFLR 4.808 3.720
FTARIIIFS 3.699 3.807
FTDENKWKS 3.722 2.812
FTDPASIAA 1.812 1.906
FTDPSSIAA 0.296 1.677
FTDPSSVAA 0.234 1.853
FTFSSYGMH 4.165 4.080
FTFWTFANY 1.114 2.496
FTISRDNSK 4.848 4.277
FTLINWRSV 3.699 4.193
FTNMEAQLI 3.336 3.814
FTNMEAQLV 2.605 3.046
FTNMEVQLI 3.119 3.886
FTNMEVQLV 2.818 3.235
FTTNIWLKL 3.127 3.753
FTTNIWMKF 3.713 3.480
FVAAFDHFY 1.230 1.854
FVMPIFEQI 3.699 4.311
FVNPISFVY 1.000 2.780
FYHISTGGY 3.486 4.235
FYPINDDFY 3.490 4.248
GAPERQRLL 4.848 4.429
GGLACDLPG 4.848 4.445
GLACDLPGR 4.848 4.437
GLSTERVRE 4.848 4.444
GLYSSTVPV 4.358 4.348
GMFTNRSGS 4.893 4.434
GPAGYTAAL 4.301 4.420
GRSLRLSCA 3.791 4.427
GSASPTPPY 1.633 3.528
GSDCTTIHY 1.947 1.180
GSEEIKSLF 4.301 3.871
GSEEIKSLY 1.708 1.807
GSVNVVYTF 4.387 4.305
GTEEIKSLY 1.146 1.538
GTEEIRSLF 4.301 3.630
GTEEIRSLY 1.079 1.417
GTEELKSLY 1.230 1.560
GTILIKVEY 3.272 3.847
GTIRTAYTY 3.622 3.474
GTIVIRVQY 3.927 3.826
GTIVVRVQY 2.962 3.857
GTVLVQVKY 3.094 3.668
GVDGGWQAL 3.699 4.235
GVNFNLYYY 1.322 3.569
GYLHDFLKY 4.301 4.390
HAWNHIMLV 4.848 4.216
HFRGFSKSI 4.893 4.423
HLRGFSKSI 4.893 4.415
HMMAVTLFY 1.763 1.837
HQFTSNPEV 3.699 4.347
HSNASTLLY 0.477 0.907
HSSKCNGMY 2.018 1.686
HTSEHGGKA 4.635 3.748
HYDYRLWHY 4.717 3.490
HYHYRLWHY 4.827 4.325
HYPYRLWHY 4.848 4.364
HYSYRLWHY 4.438 4.175
IESNPLFPV 3.699 4.403
IGVSHPLSI 4.893 4.379
IHIPGDTLF 4.301 4.373
IIYYQLAGY 2.520 4.031
ILLMTVTSI 4.472 4.386
ILMWEAVTL 4.893 4.371
ILYKDDMGV 4.606 4.340
ILYKRETTR 4.646 4.440
IMDLERRYV 4.559 4.142
IMLVSLDTV 4.848 4.316
IPHYYYYGM 4.848 4.420
IPRLGGMAF 4.301 4.394
IRFPKTFGY 4.354 4.271
ISDPLTSGL 3.013 3.876
ISSTPFAEY 2.940 2.493
ITASILLWY 1.675 1.055
ITDFAGKTV 4.309 3.643
ITDFVGKTV 4.599 3.351
ITDNVHTWT 3.929 3.495
ITDYQGKTV 4.531 3.603
ITEAELTGY 1.390 1.506
ITEVDRIEA 3.665 3.938
ITMIPHYYY 1.564 3.108
ITTESIVIW 4.441 4.279
ITVIDLEPI 4.848 4.313
IVQPENLEY 2.710 3.281
IVQYENLKY 3.775 3.308
IVTDSQYAL 4.893 4.376
IWLKLRDVY 3.307 4.336
IWLKLREKY 4.848 4.354
IYKTRHTGI 4.893 4.431
IYTDEVYDY 2.632 4.368
KAGQYVTIW 4.688 4.421
KALGPAATL 4.604 4.434
KFNPMKTYI 3.412 4.424
KFYGPFVDR 4.893 4.446
KINAWIKGV 4.508 4.400
KINAWIKVV 4.562 4.382
KLELKGMSY 2.593 3.306
KLMHLDVTL 4.893 4.377
KLTDFGLSK 4.893 4.358
KLYPNVDFY 3.540 4.067
KMFHGGLRY 3.486 3.484
KQIGGTLFE 3.699 4.435
KQIVIINPM 3.699 4.365
KSINKVYGK 4.893 4.411
KSNRIPFLY 2.307 1.737
KTDFGFYQV 2.097 3.310
KTDWLPMTV 1.463 2.208
KTETTILDV 3.793 3.406
KTKDYVNGL 4.572 4.370
KTKNNDWDY 2.775 3.504
KTKTDFGFY 3.799 3.248
KVDAIDGEY 2.979 2.180
KVFDKSLLY 3.395 3.454
KYAEAFQMV 3.699 4.367
KYMDNELVY 4.301 4.284
LAGRVPDWL 4.848 4.326
LGGLACDLP 4.848 4.419
LIDGISLGL 3.795 3.892
LIVSGIFPY 4.531 3.985
LLPAALACW 4.848 4.414
LLPRGAPER 4.848 4.452
LLSEADVRA 4.848 4.222
LMAGTLAVF 4.848 4.180
LMEHWALGA 3.218 3.199
LPADPASVL 4.301 4.418
LPPVVAKEI 4.893 4.446
LPVEYLQVP 4.848 4.434
LQDIEITCV 2.995 4.116
LQGGGPPYG 4.848 4.438
LSEADVRAL 4.848 4.273
LSEKEENMV 3.811 3.840
LSKSEFNTY 3.675 3.248
LSPVRVPNY 3.734 4.037
LSRKEFDLY 3.562 2.986
LSSTRVPNY 3.311 2.963
LSTERVREL 4.848 4.363
LTAALLLLV 4.633 2.356
LTAAVLLLI 3.981 3.357
LTAAVLLLV 4.224 2.350
LTAAVLMLV 3.688 2.824
LTALNDTGK 4.343 4.137
LTASLVMLL 3.280 3.664
LTATEEIAV 3.713 3.563
LTDALALGM 2.131 1.764
LTDFGLSKI 4.019 3.505
LTDFQPHQL 2.869 2.719
LTDFQSHQL 3.463 3.056
LTDWDFVVT 3.477 3.080
LTDYGALTL 2.304 2.577
LTEFQPHQL 3.943 3.659
LTEIASLPT 3.167 3.442
LTEPPTLAY 0.803 0.924
LTFLDCLYY 0.602 2.164
LTGGVMLFF 2.928 3.039
LTGGVTLFF 4.278 3.031
LTILIRTGL 4.848 4.246
LTMKKKSWL 4.032 4.311
LTSKELMMA 3.759 3.490
LTSRENLLL 2.622 3.011
LTSRETALM 3.522 3.422
LTSREVLLL 2.460 3.369
LVFLGPGLY 2.344 3.407
LVGPTPVNI 4.893 4.386
LVMAFIAFL 3.847 4.265
LVQIENLEY 1.877 2.670
LVSAGIRKV 4.893 4.359
MFTNRSGSQ 4.893 4.454
MGMEQTMSV 3.699 4.327
MLYPRVWPY 3.033 3.603
MMDLSHFLK 1.415 3.201
MSQIMYNYP 4.699 4.262
MSTYGWNLV 3.929 3.652
MSYAMCLNA 4.138 4.070
MTACGRIVV 3.699 3.912
MTAGIFLFF 2.673 2.368
MTDDIGMGV 1.605 1.457
MTDKTPVHS 3.818 3.087
MTDTTPFGQ 3.577 2.483
MTFPLHFRS 3.699 4.130
MTIALDPVI 4.848 4.290
MTPSRTGSY 2.234 2.582
MTTEDMLAV 3.432 3.291
MTTEDMLKV 4.110 3.634
MTTEDMLSV 3.704 3.680
MTTEDMLTV 3.641 3.536
MTYLDGHPV 3.699 3.815
MVFGRFSFA 3.699 4.261
MVFQNYALY 4.301 3.152
MVIKWIHER 4.229 4.377
MVKMGGLGY 4.301 3.563
MYPFIFFIV 3.699 4.254
NATDTWVTY 2.161 3.562
NGMYHGLYL 3.552 4.339
NGNFNFERV 3.699 4.292
NLTSTWVMY 3.301 3.419
NLTSTWVTY 3.234 3.580
NLVPMVATV 4.848 4.377
NPAACSYMV 3.699 4.351
NRSGSQQWR 4.893 4.455
NSALTLHWF 3.366 3.723
NSDPNTPDK 1.982 4.059
NSEQGGKAY 2.684 2.409
NSEQGGRAY 2.500 2.124
NSTSTWVTY 3.860 2.402
NTANTRRGT 4.893 4.373
NTFRHRVVV 4.778 4.175
NTGLYNLLI 2.704 3.451
NTSANLSLA 3.131 3.373
NVHTWTEQY 4.102 3.567
NVMDPMHGA 3.699 4.390
NYIDKVRFL 4.301 4.412
NYPYRLWHY 4.848 4.380
PERQRLLPA 4.848 4.435
PRGAPERQR 4.848 4.489
PSSAQTFFY 1.146 1.194
PSSIAARGY 4.337 3.659
PSSVAARGY 2.303 3.537
PTEQVDTLL 4.173 3.696
QEAARAALQ 4.848 4.460
QGWKGSPAI 4.893 4.441
QIDNFSLGV 2.820 3.501
QIYAGIKVK 4.848 4.429
QLIYVILTI 4.848 4.345
QMSSGNLLF 3.643 3.678
QQEAARAAL 4.255 4.391
QQRPDLILV 3.699 4.393
QQYHRFGLY 2.654 3.972
QRLLPAALA 4.322 4.434
QSSFYSDWY 3.699 1.818
QTHEPEFDY 4.418 3.627
QVNHYLLSY 1.982 3.054
QWSPGPGRL 4.301 4.401
RAALQGGGP 4.848 4.410
RALGGLACD 4.848 4.461
RFAVNPGLL 4.752 4.311
RGAPERQRL 4.848 4.408
RGVEKPPHL 4.893 4.436
RHDITGFIL 4.301 4.279
RISGVDRYY 4.274 4.072
RLASYGLYY 0.778 2.255
RLLPAALAC 4.848 4.413
RPMTFKAAV 4.848 4.396
RPPYSSYGY 4.301 4.430
RPRCAYLPF 4.301 4.413
RPRQRGIPF 4.301 4.415
RQRHYFDSA 3.699 4.415
RQRLLPAAL 4.848 4.402
RRAARAEYL 4.674 4.366
RSLIGNEEY 3.827 3.825
RTEHTGREI 4.848 4.279
RTSKAALER 4.848 4.273
RTSKAPLER 4.776 4.222
RTSKASLER 4.848 4.264
RTSKTSLER 4.848 4.217
RTSWAFCEA 2.936 3.984
RVACRDVEV 3.699 4.322
RVFPGDHFY 3.465 4.020
RVRELAVAL 4.848 4.388
RVRQAWDTL 4.301 4.392
RVYNNTARY 4.301 3.880
SADLSLERA 3.099 3.706
SEAAYAKKI 4.810 4.448
SEADVRALG 4.848 4.439
SEIDLILGY 3.517 4.311
SFSYFYPFR 4.301 4.408
SGKLKVPEW 4.893 4.481
SGYEGRVPL 4.893 4.423
SHAKVLVTF 4.301 4.391
SITEVECFL 4.825 4.348
SLICGAALY 4.301 3.981
SLMEHWALG 4.893 4.376
SLSLGAHQK 4.893 4.386
SMIYFFHHY 4.301 3.479
SNFTSTTVK 4.893 4.428
SPREECGVF 4.301 4.416
SQTSYQYLI 4.456 4.339
SQYDPKELL 3.699 4.410
SRSKPAAMY 4.301 4.297
SSDDIPPRW 4.301 3.452
SSDLKKLMH 4.893 3.029
SSKMFNYFK 4.301 4.289
SSNPVMSRF 3.627 3.945
SSYGMHWVR 4.848 4.332
STANVSLAA 3.308 3.069
STERVRELA 2.644 3.267
STESHNQTF 3.914 3.456
STMRRMALR 4.301 4.267
STSLSVSLV 3.443 3.646
SVDGFRASY 0.903 2.236
SVFELSNFA 3.699 4.331
SVKGRFTIS 4.848 4.428
SVKKDLVSY 4.848 4.328
SWNNHSYLY 3.631 4.049
TAEAGGRAY 3.940 3.596
TEAEKWPFF 4.301 4.388
TERVRELAV 4.096 4.422
TFMDHVLRY 3.147 4.160
TGIAIIAYI 3.699 4.396
TIDLDPVIY 2.828 1.970
TIMAAILAY 4.426 3.720
TINAWIKGV 3.861 4.377
TINAWIKVV 3.428 4.357
TLMAAILAY 3.361 3.620
TLNAWVKVV 4.452 4.344
TLYLQMNSL 4.037 4.351
TQIGCTLNF 4.281 4.371
TQSPVSVGF 3.699 4.352
TRAPAPFPL 3.699 4.393
TSEIQLTDY 2.359 1.643
TSETFSMGL 3.886 3.727
TSIDRFLAV 4.307 3.869
TTDISEMGA 2.274 2.643
TTEAILPEY 1.487 1.529
TTERGGKAY 2.732 2.276
TTERGGRAY 2.486 2.005
TTIFAGHLK 4.219 4.166
TTRAVNMEV 3.699 4.149
TVFRNQNRV 3.699 4.315
VAANEMGLI 4.848 4.295
VASSGMLWM 4.848 4.171
VIDLDPIPY 1.231 1.701
VIDLEPIPY 1.385 1.581
VIDLEPISY 1.404 1.916
VLDDGIYRI 4.524 4.210
VLDMGDPVK 3.414 4.268
VLYCVHQEI 4.301 4.303
VRALGGLAC 4.848 4.382
VRELAVALA 4.848 4.327
VRQAPGKGL 4.848 4.424
VSGVFPYSI 4.848 4.184
VSLFPLCLS 4.848 4.308
VSLMCSNTI 4.551 4.247
VSMDQLASY 2.215 2.826
VSNASGNVV 4.249 3.964
VSSWEEVPY 2.430 2.206
VTAKWLWGF 4.146 3.297
VTARWLWGF 3.897 3.063
VTDFKGKTV 4.309 3.368
VTRGAVLMY 2.771 3.350
VTRGAVLTY 3.512 3.525
VTTWEDVPY 2.716 2.367
VTTWENVPY 2.771 2.124
VTYECPLLV 2.537 3.096
VTYKCPLLV 3.342 3.371
VVQHENLKY 3.012 3.000
VVQPENLEY 2.581 3.066
VVQYENLKY 3.810 3.088
WAIQCYTGV 3.699 4.252
WDAYIPHYV 3.699 4.155
WLYDLWGQL 3.699 4.233
WMDLLRALI 3.998 3.321
WMSNGTWNY 0.954 2.133
WTEAKMLLD 2.975 3.154
WTEQYKFQA 4.307 3.078
WTTLLSLTF 3.747 3.147
WTVNDIQKL 4.893 4.313
WVDSTPPPG 4.066 4.138
YADHGANQL 4.301 4.157
YAEMWAQDA 2.664 3.722
YEFLQPILL 4.421 4.364
YGFSDPLTF 4.371 4.273
YLDNVGVHI 3.699 3.768
YLDWHAGHA 1.136 3.533
YLPTQQDVL 4.893 4.326
YMDYMPVMK 2.467 3.451
YMGEDGCWY 2.249 2.484
YNLLIRCLR 2.954 4.387
YQAENSTAE 3.699 4.409
YQSGLSIVM 4.848 4.285
YQSMIRPPY 4.301 3.508
YRHDGGNVL 4.342 4.351
YSDPLALKE 2.494 3.152
YSDPLALRE 2.419 2.678
YSDRRWCFD 3.030 3.089
YSIPATLLV 2.974 3.413
YSQIGAGVY 2.108 1.907
YSQVNPLTL 3.007 3.390
YTDRKWCFD 2.649 2.824
YTDYMPSMK 1.476 2.484
YTGDFDSVI 4.749 4.021
YTIGIGAFY 0.301 1.834
YTQMCDHRL 3.757 3.594
YVADALAAF 3.810 4.081
YVFPVIFSK 4.893 4.337
YVFPVIFSR 4.893 4.361
YVIKVSARV 4.675 4.259
YVYFYDLSY 2.891 2.492
YYADSVKGR 4.848 4.447
YYKDDISYF 3.142 4.426
YYSNKAYQY 4.301 4.223
YYWPRPRRY 4.301 4.342
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0201-10.xls 0 → 100644
+ 349
− 0
View file @ a04d49f4
sequence meas pred
AFIAPDRASF 4.842 4.439
ALFSGVSWIM 0.820 1.605
ALFSGVSWVM 0.859 1.536
ALIAVLTGGV 0.885 1.588
ALLAGFMAYM 0.756 1.236
ALLATSIFKL 1.562 1.288
ALLGAMTAGI 1.403 1.409
ALLIGVGNLI 2.364 2.314
ALPDPILQSI 2.028 2.065
ALSIVSLFPL 0.695 1.479
ALWGPDPAAA 2.691 2.140
ALWMRLLPLL 2.973 1.539
AMLDVDLHPA 0.753 1.337
ANFLGKIWPS 4.842 4.157
AQASIELPSM 2.420 3.366
ATPYDINQML 4.109 3.982
AVLSLSAYNI 3.053 2.705
AVNPGLLETS 4.149 4.258
AVVMSWAPPV 2.091 2.771
CLMMILPAAL 1.189 1.591
CLMMMLPATL 1.418 1.538
CTSICSLYQL 4.990 3.468
CYPGKFVNEE 4.842 4.492
CYVDIDVYCI 3.665 3.984
DLLYFLCLGF 2.097 3.267
DLLYFVCLGV 1.525 1.979
DLMCHATFTM 2.320 2.562
DLMRRGDLPV 0.798 2.887
DMLYFLCLGF 2.185 3.246
DWSGYSGSFI 4.842 4.371
EELKSLFNTV 3.224 4.081
EIVNLLDNKV 4.301 3.977
EKLKSLFNTI 4.301 4.293
ELFARSSDPR 4.301 4.376
ELIDNEFTEV 1.760 1.816
ELMKMGAPEV 3.049 2.368
ELMMTTIGVV 1.563 2.421
ELMRRGDLPV 1.352 2.615
ELNAELSDKL 4.301 4.001
ELVNQIIEQL 4.842 3.526
ETFGFEIQSY 4.662 4.316
FAAICTHLEV 1.029 2.035
FAVNPGLLET 4.063 3.849
FILLAIAMGL 1.175 1.652
FIYAGSLSAL 0.571 1.451
FKRKGGIGGY 4.842 4.484
FLAHAIGTSI 0.913 1.359
FLAHYIGTSL 0.681 1.176
FLAIPPTAGI 1.065 1.525
FLAIPPTAGV 0.556 1.151
FLDLPLPWAA 0.623 1.268
FLDLPLPWTA 0.714 1.224
FLEFSADLII 2.119 2.360
FLFLMSGKGI 1.599 1.982
FLFLMSGRGI 0.624 1.931
FLGEDGCWYG 1.720 2.264
FLKFNVLQNL 2.329 2.103
FLMPFMHYIV 0.301 0.648
FLMVLLIPEP 1.498 1.966
FLQEETLTQM 0.034 1.546
FLQGSVICFV 4.875 0.823
FLSMLSATGL 1.895 1.588
FMIAFISCFA 1.512 0.936
FMKDGRSLVV 1.639 1.800
FMMVLLIPEP 1.969 1.912
FMTATPPGSV 1.862 1.452
FQVDCFLWHV 0.000 0.809
FSFGASCFIL 1.550 2.115
FSLGLLCISI 0.880 2.026
FSMGLLCLTL 3.954 1.644
FTMGVLCLAI 1.245 1.354
GADPNIRTGV 3.146 3.800
GIDPNIRTGV 2.858 3.019
GIDPNLRTGV 2.875 3.067
GIMTIDLDPV 1.069 1.596
GIVEQCCTSI 4.466 3.057
GLFGKTQVGV 0.793 1.445
GLFSSDLKKL 3.030 2.551
GLFTNSSGTQ 4.842 4.096
GLIYNRMGTV 1.615 2.193
GLLCVMASSV 1.060 1.468
GLNTFTNMEV 0.582 1.378
GMFTDRSGSQ 4.469 4.177
GMFTNRFGSQ 4.842 4.009
GMFTNRLGSQ 4.842 4.000
GMFTNRSGFQ 4.842 4.088
GMFTNRSGSQ 4.842 4.231
GMFTNRYGSQ 4.842 4.142
GMLWMADVPL 0.690 1.514
GMLWMAEIPL 0.918 1.441
GQFGEVYEGV 1.570 1.783
GQYGEVYEGV 1.578 1.891
GQYGKVYEGV 1.682 2.283
GQYGVVYEGV 2.319 2.040
GVDPNIRTGV 2.546 3.373
GYSLVGIDPF 4.662 4.436
HIMLVSLDTV 2.205 1.947
HMILAVVITL 1.088 1.840
HMVRKITLEV 4.195 1.815
HYPKVYKTYF 4.842 4.470
IAMGLVFICV 3.333 1.795
ILAGPMPVTV 0.784 1.398
ILAGVSLLPV 0.668 1.029
ILALFLAHYI 0.802 1.421
ILCSLMEHWA 3.218 2.723
ILFPDDVQEL 0.301 1.473
ILIGFLVLWI 1.987 1.392
ILLAIAMGLV 1.564 1.471
ILLKATLLAV 0.350 1.153
ILLMLVTPSM 2.009 1.790
ILLTAVAPSM 3.396 1.879
ILTILTIIGL 1.268 2.038
IMAAILAYTI 1.486 1.395
IMDKNIILKA 4.633 2.512
ITLLCLIPTV 2.644 1.646
IVDCLTEMYY 4.301 3.940
IVILFYSMTL 2.507 2.487
IYYLEKANKI 4.842 4.335
KIADFGLSRL 2.797 2.453
KIDTTHVSKV 2.314 3.054
KILNPYMPSV 0.683 1.501
KITTESIVIW 4.099 4.221
KLARASFIEV 1.173 1.169
KLEKASLIEV 1.885 1.844
KLGAGQYGEV 3.314 2.092
KLGEGQYGEV 2.728 1.949
KLGFDEIKGL 2.130 2.948
KLGFEEIKGL 1.491 2.879
KLGGGHYGEV 3.257 2.135
KLGGGQFGEV 3.269 1.844
KLGGGQHGEV 3.334 2.452
KLGGGQYGEV 3.193 2.137
KLGGGQYGVE 4.232 4.192
KLGGGQYGVK 4.381 4.336
KLGGGRYGEV 3.099 2.377
KLVEITPIGL 1.990 1.490
KLVMAFIAFL 1.462 1.545
KMARTIESEV 2.160 1.588
KMDSFLDMQL 0.794 1.498
KMEKASFIEV 2.157 1.764
KMLMTGTLAV 0.811 1.303
KMSPGYVLGI 0.989 1.531
KMSPGYVLGV 0.648 1.139
KPAVSSDSDI 4.611 4.418
KQIEGALNLL 2.752 2.420
KQITNELNYV 1.461 1.783
KSLFNTIAVL 3.099 3.395
KSLFNTVATL 2.575 3.323
KSLFNTVAVL 0.000 3.566
KSLTTTMQFK 4.301 4.354
KSLYNTVATL 2.872 3.178
KTMAMALSIV 1.110 1.902
KTMAMVLSIV 1.423 1.678
KVADFGLSRL 2.771 2.814
KVDTTHVSKV 1.633 3.384
KVIEETADYV 2.925 1.855
KVLNPYMPSV 0.928 1.778
KVLNPYMPTV 1.073 1.694
KWMMAMKYPI 2.590 3.167
KYPITADKRI 4.842 4.464
KYTAFTIPSI 3.902 3.755
LCPFRGFFPF 4.486 4.390
LILGAQALPV 1.736 1.803
LLAGFMAYMI 0.848 1.325
LLAIAMGLVF 4.556 3.816
LLALLALWGP 4.472 3.096
LLALWGPDPA 3.293 2.497
LLENDMKFTV 0.761 1.916
LLLGLMILLT 3.223 2.003
LLLLGLMILL 1.071 1.649
LLLLVAHYAI 1.991 1.708
LLLMRTSWAL 0.742 1.586
LLLQDSECKA 3.705 2.816
LLLTIGLSLV 0.593 1.314
LLMLLPTALA 2.109 1.699
LLMVAVIMAI 0.956 1.238
LLPLLALLAL 3.766 2.362
LLQNSQVFSL 0.777 1.804
LLRDAGLVKM 3.699 3.681
LLTGGAMLFL 1.677 1.717
LLVKLALITV 1.246 1.578
LMAAILAYTI 1.671 1.447
LMGLGKGWPL 2.212 2.522
LMLATGMKNV 1.121 1.959
LMLLALIAVL 1.977 1.798
LMMILPAALA 1.042 1.800
LMMMLPATLA 1.131 1.806
LMSGKDVFYL 0.678 1.341
LQMEDKAWLV 0.561 1.442
LQMENKAWLV 1.005 1.542
LSLSLGAHQK 3.125 4.490
LSMGLITIAV 1.901 1.980
LVEALYLVCG 4.125 4.316
LVSIPRTNIV 2.446 4.033
LWFSFGASCF 4.842 4.366
MALWMRLLPL 3.507 2.390
MIAGVFFTFV 1.103 1.178
MIAGVLFTFV 1.030 1.223
MLLILCTSQI 1.880 1.672
MLLMLLPTAL 1.222 1.347
MLMTGTLAVF 1.876 2.079
MLVSQALNSV 0.602 1.340
MMAMKYPITA 1.295 1.826
MMATIGIALL 0.976 1.469
MMLVAPSYGM 4.054 1.560
MMPIKSIVTL 0.778 2.283
MPIEPGDIGY 4.666 4.409
MVIGMAMTTV 0.972 1.808
MYAGKMTDSI 3.585 4.185
NMLAFQPTYL 1.417 1.146
NTATTVLLDE 4.580 4.337
NWPDGSNIGF 4.842 4.398
NYLLAWKQVL 2.192 4.243
PLLALLALWG 4.638 4.089
PMLNPFIYSL 2.929 2.183
PWMRINNETI 4.842 4.331
PYRSLIRFPI 4.842 4.417
QLTSSELMAI 2.394 2.427
QLVKGFERFQ 2.802 4.291
QQFELIDNEF 3.291 3.991
QQYPATFHLL 3.103 2.827
QVMLLVLCAV 2.166 1.982
QVYPGLLEKV 0.477 2.646
QYSEKGKWTT 4.842 4.438
RFPIGTAPVL 4.842 4.336
RLASIELPSV 0.000 1.137
RLKHGTFGPV 2.636 2.543
RLLPLLALLA 3.113 1.728
RLMTGDTYTA 2.141 1.283
RMMTGDTYTA 2.136 1.254
RMVLAFITFL 0.513 1.723
RPRLCTREEF 4.842 4.505
RQASIELPSM 2.148 3.383
RSLFNTVATL 2.377 3.513
RSLYNTVATL 2.867 3.391
RSLYNTVAVL 2.688 3.625
RTIMAVLFVV 0.261 2.115
RTLIYSSPLL 2.873 2.987
RTLNAWVKVV 4.304 3.177
RTPYRSLIRF 4.842 4.369
RTYSGPMNKV 2.483 3.217
RYPLTFGWCF 4.504 4.401
RYVKQESLML 4.842 4.332
SGPSNTYPEI 4.842 4.279
SIILEFFLIV 1.477 2.039
SIILEFFLMV 0.994 1.837
SILLMTVTSI 2.968 2.564
SILLRDAGLV 4.544 3.314
SILYKDDMGV 3.249 2.184
SLAAIANQAV 0.829 1.593
SLACSWGMVV 4.699 1.603
SLCLMMILPA 0.755 2.104
SLCLMMMLPA 1.818 2.277
SLFNTIAVLY 1.964 3.283
SLFNTVATLY 2.117 3.388
SLIRFPIGTA 1.884 2.283
SLLFKTEDGV 1.829 1.881
SLLFKTSAGV 1.335 1.433
SLLFKTSVGV 1.348 1.472
SLMASSPTSI 1.319 1.288
SLMEHWALGA 1.604 1.240
SLQPLALEGS 4.944 3.746
SLSAYNIKLA 3.064 2.680
SLSPAYWMLS 3.288 3.265
SLVGIDPFRL 1.241 1.809
SLYNLVKSSV 0.602 1.470
SMLSATGLSL 1.982 1.696
SQQYPATFHL 4.346 3.440
SSFSFGGFTF 4.168 4.009
STTVKAACWW 3.901 4.479
SWTSNSIVTF 3.658 4.398
SYMMDDLELI 2.116 3.538
TACDWLFSHV 4.009 2.444
TIMAAILAYT 1.525 2.026
TLATGPILTL 1.816 1.742
TLGMCCIITA 1.829 2.208
TLIASLVMLL 1.694 1.516
TLLLLGLMIL 1.713 2.115
TLLLLTLLAT 2.151 2.556
TLLQQYCLYL 3.778 1.294
TLMAAILAYT 0.883 1.292
TLMLLALIAV 0.876 1.183
TLMLVALLGA 0.734 1.745
TLPDVKSFVL 3.389 2.702
TLTAAVLMLV 0.600 1.350
TMFGGVSWMI 1.008 1.116
TMFGGVSWMV 0.649 0.865
TMLLMLLPTA 1.486 1.642
TMTLWYMWQV 1.460 1.229
TPRVTGGGAM 3.329 4.517
TRLNAWVKVV 4.842 4.119
TSMAMTCIAV 1.091 2.373
TWEAWWTEYW 4.179 4.390
TWWNRNGPTT 4.842 4.322
VCFMYSDFHF 3.055 4.102
VDRFYKTLRA 4.842 4.467
VDVCGMFTNR 4.842 4.458
VHPVHAGPIA 4.842 4.466
VIMITYWDLI 3.134 2.643
VLAFITFLRV 1.605 1.556
VLEDVQAAGI 2.365 2.844
VLFSGVSWTM 1.261 1.383
VLFVVTLIPL 1.756 1.557
VLGEAWRDQV 2.845 2.751
VLGNYKEICV 1.928 2.146
VLLKTALLIV 1.359 1.564
VLLLITHYAI 0.665 1.712
VLLLTIGLSL 0.720 2.075
VLLLVTHYAI 2.341 1.746
VLLRVHTEHV 3.098 1.740
VLMLVAHYAI 1.989 1.422
VLSIVSLFPL 0.928 1.513
VLVGPTPVNI 3.610 2.673
VMAWRTIMAV 0.708 1.192
VMEHHTLPDV 2.675 2.220
VMSWAPPVGL 2.577 1.973
VPTKLSPISI 4.266 4.365
VVIPMLNPFI 3.104 2.396
VVYPTVTAPV 1.758 1.815
VWLGRTVSTS 4.842 4.389
VYPTVTAPVV 4.631 4.239
WGPDPAAAFV 3.649 4.087
WLLVFACSAV 3.131 1.340
WLMLNPNDTV 1.066 1.504
WMRLLPLLAL 4.866 2.880
WVNCSSMTFL 2.438 3.353
YAMCLNTFVL 1.058 1.654
YAMCTNTFVL 1.521 1.736
YICEEASVTV 4.079 1.601
YILWENNIKL 0.767 1.755
YLALIATFKI 1.004 1.289
YLALMATFKM 1.108 1.639
YLDSGIHSGA 2.043 1.705
YLDWHAGHAW 4.532 3.409
YLFHGYNMGN 1.450 2.808
YLIRALTLNT 1.325 1.965
YLLAWKQVLA 0.972 1.269
YLQGGGGPKA 2.547 2.954
YLTDMTLEEM 1.600 1.369
YMATQISSAM 2.690 1.978
YMATQISSAT 3.047 2.498
YMGEDGCWYG 2.325 2.326
YQEYESILTL 2.939 2.572
YQLAVTIMAI 1.510 1.385
YQLWTALISL 1.276 1.398
YQLWTALVSL 0.225 1.482
YTMCSGKFSI 1.902 2.064
YVVIAILTVV 1.779 2.064
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0202-9.xls 0 → 100644
+ 127
− 0
View file @ a04d49f4
sequence meas pred
AEFKYIAAV 3.792 2.619
ALQDSGLEV 1.514 1.802
AMGAASLTL 1.768 1.811
APRTLVYLL 4.084 4.281
AQIDNYNKF 3.459 3.815
AVLSIVNRV 3.196 1.875
AVNPGLLET 4.213 3.903
AYIDNYNKF 4.539 4.310
AYIDNYNKV 3.279 3.394
CLIQKALFM 3.249 2.994
CLPACVYGL 0.602 1.070
CVGDHQAAM 3.430 3.341
DHQAAFQYI 4.215 4.355
EEMNLPGRW 4.891 4.513
ERYFRIHSL 4.891 4.311
ERYFRINSL 4.891 4.346
FAAAFFPAV 0.135 0.862
FLATAGSAM 0.930 0.911
FLGFLATAG 2.301 2.847
FLIRQLIRL 0.000 0.839
FLLGLLVHV 1.570 0.665
FLSLSLLVI 2.237 1.152
FLTDYIPGA 0.851 0.593
FLVPFVVFL 0.000 0.494
FLWEDQTLL 0.000 0.626
FMGVLVNSL 0.727 0.808
FMIVSISLV 0.249 0.641
FPFKYAAAF 4.830 4.153
FPFLYKFLL 3.722 3.257
FPQGKAREF 4.891 4.503
FPYSTFPII 4.313 4.103
FQGRGVFEL 0.845 1.444
FRYNGLIHR 2.813 4.446
FSFPQITLW 3.943 2.987
FVIFACNFV 1.046 0.885
GFAAPQFSL 2.739 2.508
GIVQQQQQL 2.940 3.175
GLAAAVVAV 1.496 0.646
GLVFHSQPI 0.985 1.598
GNYPVQQIG 2.517 4.482
GSVNVVYTF 3.951 4.015
GVRLLAHVI 4.002 4.074
HVVWAANEL 3.179 2.501
IIKKCEQFV 1.404 3.038
IIVDSQYVM 2.332 2.758
ILQRLSATL 0.000 1.890
ILYKRETTR 4.422 4.127
IPLTEEAEL 4.891 4.367
IRFPKTFGY 4.542 4.482
ITMGSLFFV 0.000 0.859
ITTESIVIW 4.148 4.278
IVIYIVQML 2.809 2.195
IVQQQQQLL 2.990 3.562
IVTDSQYAL 1.882 1.736
KAGQYVTIW 4.587 4.352
KALGPAATL 2.792 3.799
KFNPMKTYI 3.905 3.194
KFYGPFVDR 4.259 4.420
KIGKEAIVI 3.256 3.829
KIIIVAVHV 3.563 2.114
KILSVLAPL 1.358 1.381
KINAWIKGV 2.637 2.167
KINAWIKVV 3.470 2.779
KLSPLCITM 1.930 1.890
KNWMTQTLL 3.653 4.073
KSINKVYGK 4.682 4.391
KTKDYVNGL 2.961 1.770
LIRILQRAL 2.559 3.780
LLSRVYQIL 0.404 1.433
LLTALGMSL 0.900 1.318
LPPVVAKEI 3.591 4.479
LQTTIHDII 4.380 3.152
LVQYMDDIL 1.856 3.588
LVSAGIRKV 4.646 2.731
MAQVHQGLM 3.640 4.136
MLTACQGVG 2.994 3.763
NQLLIAILL 3.695 3.398
QGWKGSPAI 4.891 4.318
QIYAGIKVK 4.891 4.450
QPAPQQGQL 2.696 4.360
RFAVNPGLL 4.444 3.836
RILQRALFM 3.780 3.988
RISGVDRYY 4.824 4.269
RIVARQIVD 3.674 4.421
RLIRGKMTL 1.855 3.098
RMYNPTNIL 1.891 1.901
RPMTFKAAV 4.891 4.146
RRAARAEYL 3.802 3.778
RTLNAWVKV 4.661 3.903
RTSKAALER 4.891 4.427
RTSKAPLER 4.891 4.426
RTSKASLER 4.891 4.389
RTSKTSLER 4.891 4.414
RVVLQSKEL 3.163 3.717
SDYLELDTI 4.682 3.999
SEAAYAKKI 4.891 4.083
SEIDLILGY 4.654 4.414
SNFTSTTVK 4.891 4.485
SPAIFQCSM 4.746 4.361
SPAIFQSSM 4.891 4.348
SPAIFQYTM 3.504 4.249
TINAWIKGV 2.849 2.609
TINAWIKVV 3.264 3.213
TLNAWVKVV 1.914 2.089
TQIGCTLNF 4.268 3.885
TVPWPNASL 2.347 3.360
VIYIVQMLA 3.373 3.201
VLLPVLFGV 0.161 1.019
VVFVVFMGV 3.538 2.322
VYQILQPIL 2.108 4.356
WIKYIQYGV 1.309 1.358
WLSTYAVRI 0.847 1.074
WMYRQQNPI 1.377 1.376
WTVNDIQKL 4.124 3.342
YEFLQPILL 3.145 3.493
YLCLIQKAL 1.459 1.387
YLEPAIAKY 5.000 3.659
YLPTQQDVL 3.299 1.432
YNPQSQGVV 3.587 4.237
YRHDGGNVL 4.672 4.164
YRRWIQLGL 3.713 4.165
YTGDFDSVI 2.267 2.588
YVADALAAF 2.934 1.604
YVFPVIFSK 4.226 3.171
YVFPVIFSR 3.400 2.681
YVIKVSARV 2.317 1.362
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0203-10.xls 0 → 100644
+ 192
− 0
View file @ a04d49f4
sequence meas pred
AIMAVGMVSI 1.764 1.420
AIYGAAFSGV 0.935 0.827
ALGMMVLKIV 1.748 1.784
ALIAVLTGGV 0.026 0.774
ALIFILLTAV 1.124 1.066
ALLGAMTAGI 1.770 1.063
AMLDVDLHPA 0.309 1.398
ATPYDINQML 4.302 3.663
AVFKMSPGYV 0.855 1.330
AVNPGLLETS 3.308 3.637
CLMMILPAAL 1.592 1.373
CLMMMLPATL 0.836 1.396
EELKSLFNTI 3.188 3.993
EELKSLFNTV 4.301 3.747
EELKSLYNTI 4.301 4.065
EELRSLFNTI 4.301 3.924
EKLKSLFNTI 1.568 4.056
EKLKSLFNTV 4.301 3.850
EKLKSLYNTI 1.380 4.122
EKLKSLYNTV 2.808 3.932
ELMMTTIGIV 0.306 1.650
ELMMTTIGVV 0.936 1.698
ELMRRGDLPV 2.143 2.015
ELVNQIIEQL 4.645 3.346
ETFGFEIQSY 4.848 4.333
FAVNPGLLET 3.763 3.023
FKRKGGIGGY 4.848 4.357
FLAHAIGTSI 1.670 0.835
FLAHYIGTSL 0.519 0.935
FLAIPPTAGI 1.110 0.741
FLAIPPTAGV 0.238 0.606
FLDLPLPWTA 2.273 1.808
FLFFMQGKGI 0.576 1.384
FLFLMSGKGI 1.061 1.154
FLFLMSGRGI 0.801 1.146
FLSGKGLGKT 1.506 1.421
FLTIPPTAGI 0.991 0.967
FMIAFISCFA 1.748 0.795
FMKDGRSLVV 1.276 0.866
FMTATPPGAT 1.469 1.632
FMTATPPGSV 0.224 0.720
FMTATPPGTA 0.337 1.048
FQVDCFLWHV 0.477 0.960
FTMGVLCLAI 0.966 1.350
GIITLYLGAV 0.697 1.256
GIMAVGLVSL 1.383 1.725
GIMTIDLDPV 1.402 1.303
GLAFSIMKSV 1.068 1.074
GLFGAIAGFI 0.000 1.202
GLFGKTQVGV 0.000 1.134
GLFKTLTGEI 1.177 1.186
GLFKTNTGTI 1.661 1.295
GLFTSLGKAV 1.274 1.092
GLLCVMASSV 1.416 1.205
GLMILLTGGA 1.364 1.186
GLNTFTNMEV 1.185 0.984
GMAMTTTLSI 1.059 1.155
GMAMTTVLSI 0.815 1.274
GMCCIITASI 1.925 1.262
GMIIMLIPTV 0.653 1.332
GVSGNIVSSV 1.486 1.214
ILAAVSVSPL 1.114 1.025
ILAGPMPVTA 2.099 1.414
ILAGPMPVTV 0.416 0.922
ILAGVSLLPV 0.912 0.747
ILALFLAHYI 1.526 1.290
ILAVVSVSPL 1.597 1.301
ILIRTGLLVI 0.536 1.665
ILLKATLLAV 0.345 1.199
ILNPYMPSVV 0.514 0.934
IMKDGRVLVV 0.785 1.250
KILNPYMPSV 1.687 1.550
KLALITVSGL 0.865 1.328
KLARASFIEV 1.304 1.037
KLFMALVAFL 0.525 1.338
KLSMGLIAIA 1.360 1.392
KLTLKGMSYV 1.728 1.003
KLVEITPIGL 1.226 1.620
KMFEATARGA 1.709 1.383
KMFESTYRGA 1.018 1.108
KMLMTGTLAV 1.000 1.127
KMSPGYVLGI 1.186 1.120
KMSPGYVLGV 0.000 0.860
KQITNELNYV 1.370 1.498
KTMAMALSIV 1.217 1.218
KTMAMVLSIV 0.072 1.147
KVFPYALINK 2.410 4.097
KVSCTILAAV 1.736 1.154
LIASLVMLLV 1.811 1.281
LLAIGCYSQV 0.918 1.108
LLALGCYSQV 1.106 1.077
LLALNDMGKV 1.176 1.261
LLAMGCYSQV 0.427 0.999
LLFLNDMGKV 0.835 1.186
LLFMILTVAA 2.670 1.461
LLLGVGLAMA 0.367 1.553
LLLLTLLATV 0.137 1.295
LLLTIGLSLV 1.166 1.116
LLMLLPTALA 1.698 1.149
LLMLVTPSMA 1.374 1.199
LLMLVTPSMT 2.229 1.826
LLVISGLFPV 0.686 1.125
LLVISGVFPV 1.233 1.211
LLVKLALITV 0.000 1.273
LMMATIGIAL 0.950 1.222
LMMILPAALA 1.995 1.357
LMMMLPATLA 1.245 1.249
MAISCVPNAV 1.420 1.613
MIAGVFFTFV 0.000 1.017
MIAGVLFTFV 0.268 1.039
MLLILCVTQV 1.262 1.513
MLLVLCVTQV 2.245 1.462
MMATIGIALL 0.000 1.066
MVIGMAMTTV 0.000 1.049
NLKYSVIVTV 0.748 1.118
NLKYTVIITV 0.968 1.225
PLVAGGLLTV 1.546 1.840
QLCDHRLMSA 1.735 1.633
QMFETTMRGA 0.989 1.300
QVMLLVLCAV 2.781 1.712
RILHNFAYSL 2.033 3.085
RLAANAICSA 2.105 1.191
RLASMAICSA 1.389 1.172
RLASNAICSA 2.133 1.223
RLFMALVAFL 1.228 1.379
RTATLILAGV 0.812 1.334
RTLNAWVKVV 2.599 2.983
RVILAGPIPV 0.925 1.930
RVILAGPMPV 0.890 1.586
SAYTALFSGV 0.854 1.333
SGPSNTYPEI 4.848 4.166
SLAAIANQAV 0.796 0.957
SLCLMMILPA 1.296 1.959
SLFPLCLSTT 0.000 1.550
SLGLILLKIV 1.169 1.966
SLGLILLKMV 1.766 1.848
SLLFKTSAGV 2.459 1.126
SLLFKTSVGV 1.346 1.482
SLVMLLVHYA 2.806 1.550
SLVSAGSGKV 1.290 1.198
SMFEPEREKV 2.146 1.445
SMTCIAVGLV 1.262 1.201
SMTCIAVGMV 1.334 1.205
SMVSAGSGEV 2.159 1.099
STTVKAACWW 4.412 4.391
SVYTTMFGGV 0.915 1.160
TAYGVLFSGV 1.208 1.555
TIGLSLVASV 1.107 1.742
TIMAAILAYT 0.965 1.620
TLATGPILTL 1.084 1.472
TLATGPISTL 0.226 1.242
TLATGPITTL 1.082 1.276
TLATGPLTTL 0.967 1.152
TLATGPVLTL 1.453 1.473
TLCAIILGGL 0.569 1.657
TLIAMDLGEL 1.103 1.726
TLIASLVMLL 1.457 1.379
TLILAPTRVV 1.630 1.618
TLLATVTGGI 1.110 1.331
TLMAAILAYT 0.261 1.111
TLMAIDLGEL 1.129 1.308
TLMAMDLGEL 0.923 1.330
TLMLLALIAV 1.464 1.194
TLMLVALLGA 1.160 1.441
TLTAALLLLV 0.694 1.159
TLTAAVLLLV 0.759 1.129
TLTAAVLMLV 0.538 0.997
TLYAVATTFI 1.139 0.895
TLYAVATTFV 0.423 0.692
TLYAVATTII 1.685 1.037
TLYAVATTIL 2.005 1.178
TLYAVATTVI 2.292 1.050
TMFGGVSWMI 0.286 1.215
TMFGGVSWMV 1.814 0.901
TMTDDIGMGV 0.880 1.108
TMWHVTRGAV 2.582 1.639
TMWHVTRGSV 1.386 1.572
TRLNAWVKVV 3.983 3.908
TWEAWWTEYW 4.569 4.412
VHPVHAGPIA 4.848 4.375
VLLKTALLIV 1.604 1.713
VLSIPPTAGI 2.354 1.338
VMAWRTIMAV 0.938 0.948
WMTTEDMLAV 1.311 1.223
WMTTEDMLSV 0.951 1.179
WMTTEDMLTV 1.574 1.195
YLALLAAFKV 1.178 1.195
YLSSRAKLAL 1.449 1.427
YMLDLQPETT 3.699 2.054
YQLAVTIMAI 1.052 1.536
YVVIAILTVV 1.322 1.508
experiments/benchmark_mhci_reliability/predictions/blind/netmhc/pred.netmhc.blind.HLA-A-0206-10.xls 0 → 100644
+ 201
− 0
View file @ a04d49f4
sequence meas pred
AILLVAVSFV 1.785 1.786
AIVLEFFMMV 0.896 1.313
AIYGAAFSGV 0.660 1.063
ALIAVLTGGV 1.309 1.501
ALIFILLTAV 1.755 1.513
AMLDVDLHPA 0.850 1.176
ATLLVAVSFV 1.424 1.865
ATPYDINQML 4.844 3.489
AVLDDGIYRI 1.025 1.603
AVNPGLLETS 3.057 3.460
EELKSLFNTV 2.712 3.444
EELRSLFNTI 3.056 3.722
EELRSLFNTV 2.480 3.273
EKLKSLFNTI 0.301 3.824
EKLKSLFNTV 2.535 3.427
EKLKSLYNTI 3.570 4.163
ELVNQIIEQL 4.844 3.530
ETFGFEIQSY 4.844 4.351
FAVGLLFRRL 1.311 2.044
FAVNPGLLET 3.010 2.323
FIAFLRFLAI 1.174 1.724
FKRKGGIGGY 4.844 4.476
FLAIPPTAGV 2.080 1.326
FLDLPLPWAA 1.774 1.368
FLDLPLPWTA 1.796 1.525
FMIAFISCFA 2.049 1.122
FMMVLLIPEP 2.094 2.147
FMTATPPGSV 2.827 1.639
FNANAEEYHA 4.844 3.417
FQVDCFLWHV 0.000 0.595
FSLGILCVSI 0.561 1.567
FSLGLLCISI 0.415 1.565
FSLGVLGMAL 0.545 1.617
FSMGLLCLTL 0.929 1.507
FTLTVAWRTA 2.575 1.917
FTMGVLCLAI 0.732 0.986
FTMTHRRPTI 2.811 1.852
FTVQADMGCV 2.045 1.751
FVVTTDISEM 2.473 1.885
GIIFILLMLV 2.288 1.946
GIITLYLGAV 0.701 1.673
GIMTIDLDPV 1.919 1.301
GIVAIDLDPV 0.987 1.461
GIVTIDLDPV 1.073 1.557
GLFGAIAGFI 3.405 2.618
GMIIMLIPTV 1.977 1.416
GQIDNFSLGV 0.751 1.132
GQIHLAIMAV 0.125 1.169
GQVMLLILCV 1.888 1.784
GVVTTSGTYV 2.823 2.086
HQIFGTAYGV 1.314 1.197
HQLWATLLSL 1.290 1.281
HQLWTTLLSL 1.963 1.324
HQVFGTAYGV 1.728 1.259
IAVASGLLWV 1.029 1.790
IILEFFLIVL 2.513 1.803
IILEFFLMVL 2.517 1.707
ILAGVSLLPV 0.204 1.283
ILLKATLLAV 1.260 1.312
ITASILLWYA 0.298 1.540
ITLLCLIPTV 0.835 1.458
ITLTAALLLL 1.439 2.099
IVLEFFMMVL 2.030 1.778
IYHPQQFVYA 4.009 3.786
KILNPYMPSV 0.712 1.171
KIVGLYGNGV 1.170 1.547
KLARASFIEV 1.344 1.306
KLVEITPIGL 2.553 1.702
KLVMAFIAFL 1.062 1.549
KLWVTVYYGV 3.312 1.306
KMLMTGTLAV 1.677 1.246
KMSPGYVLGV 1.848 1.119
KQIANELNYI 1.513 1.269
KQISNELNYI 1.154 1.377
KQITNELNYV 1.132 1.081
KQLGQVMLLI 1.045 1.556
KQLGQVMLLV 0.762 1.223
KTLTGEIGAV 1.488 1.837
KTMAMALSIV 1.964 1.353
KTMAMVLSIV 0.293 1.401
KVFPYALINK 2.897 3.651
KVIGLYGNGV 1.092 1.363
KVLNPYMPSV 0.745 1.110
KVLNPYMPTV 0.429 1.098
KVSCTILAAV 1.106 1.196
KVSCTILAVV 1.305 1.588
KVVGLYGNGV 1.072 1.494
KVVIFILLML 3.616 2.113
KYTAFTIPSI 2.831 3.245
LILGAQALPV 1.264 1.371
LITVSGLYPL 1.278 1.885
LLLGVGLAMA 0.582 1.885
LLLLGLMILL 1.334 2.152
LLLLTLLATV 1.378 1.445
LLLLVAHYAI 1.728 1.860
LLLMRTSWAL 1.124 1.775
LLLTIGLSLV 1.793 1.564
LLVISGLFPV 0.055 1.138
LLVISGVFPV 0.000 1.273
LLVKLALITV 2.886 1.621
LMLVTPSMTM 2.989 2.528
LMMATIGIAL 1.135 1.423
LMMTTIGIVL 1.489 2.024
LQMEDKAWLV 0.436 1.078
LQMENKAWLV 0.071 1.212
LSMGLIAIAV 0.719 1.650
LSMGLITIAV 1.485 1.572
LSVSLVLVGV 1.879 1.940
LTIMDLHPGA 2.023 1.957
LTMKEKSWLV 1.868 1.972
LVMLLVHYAI 2.181 1.841
LVVVTTLCAI 1.960 1.688
MAILCVPNAV 0.729 1.711
MAISCVPNAV 1.440 1.624
MASSALLWMA 2.545 1.792
MASSVLLWMA 1.957 1.862
MIAGVFFTFV 0.009 1.066
MIAGVLFTFV 0.388 1.141
MLLILCVTQV 0.899 1.660
MLLMLLPTAL 0.730 1.872
MLLVLCVTQV 1.925 1.550
MMLVAPSYGM 1.850 1.847
MTLLCLIPTA 1.195 1.633
MVAGGLLLAA 1.283 1.345
MVIGMAMTTV 0.725 1.164
NQILEENMEV 1.465 1.770
NQILEENVEV 1.749 1.830
NQLIYVILTI 2.208 1.693
NQLTYVVIAI 1.374 1.480
QLIPCMDVVL 3.036 2.359
QVMLLVLCAV 1.073 1.456
RALIFILLTA 2.148 2.336
RILHNFAYSL 2.918 1.793
RQMESEGIFL 0.964 1.357
RTATLILAGV 0.715 1.569
RTIMAVLFVV 1.296 1.498
RTLILAPTRV 2.669 2.439
RVILAGPIPV 1.526 1.605
RVILAGPMPV 1.505 1.562
RVLIFILLTA 2.599 1.998
SAYTALFSGV 0.067 1.279
SGPSNTYPEI 4.844 3.923
SIILEFFLIV 1.641 1.430
SIILEFFLMV 1.196 1.298
SLCLMMILPA 1.812 2.500
SLLFKTSAGV 1.554 1.841
SLLFKTSVGV 2.005 1.812
SLVMLLVHYA 2.627 2.003
SQVNPITLTA 2.113 1.703
SQVNPLTLTA 2.224 1.538
STIPETILEL 1.901 1.811
STTVKAACWW 4.844 4.378
SVSGDLILEI 1.950 1.876
SVYTTMFGGV 0.292 1.374
TAAAWYLWEV 0.110 1.263
TAYGVLFSGV 0.189 1.434
TILIRTGLLV 2.005 2.467
TLMLLALIAV 1.722 1.510
TLMLVALLGA 2.578 1.959
TLTAALLLLV 1.891 1.606
TMFGGVSWMV 0.353 1.167
TMLDVDLRPA 1.228 1.668
TMLLMLLPTA 0.413 1.828
TMTDDIGMGV 0.752 1.513
TMTLWYMWQV 1.872 1.481
TQHGTILIKV 2.722 1.877
TSMAMTCIAV 0.964 1.704
TVVVGDIIGV 0.388 1.637
TVVVGDTIGV 1.340 1.818
TWEAWWTEYW 4.844 4.420
VHPVHAGPIA 4.844 4.310
VLLKTALLIV 1.569 1.997
VLVGPTPVNI 3.809 2.859
VMAWRTIMAV 1.892 1.605
VQIENLEYTV 0.644 1.175
VQYENLKYSV 1.495 1.271
VQYENLKYTV 1.786 1.303
VVIFILLMLV 2.987 2.011
WALRHPGFTV 1.923 1.776
WMTTEDMLAV 1.400 1.341
WMTTEDMLSV 1.029 1.452
WMTTEDMLTV 0.934 1.490
WTLYAVATTV 1.955 1.544
WTMKILIGVV 0.921 1.880
YLALLAAFKV 0.984 1.579
YMLDLQPETT 4.845 2.063
YQLAVTIMAI 1.054 0.893
YQLAVTITAI 1.999 0.923
YQLWTALISL 0.243 0.942
YQLWTALVSL 0.769 0.944
YSMCTGKFKV 1.736 1.930
YTPEGIIPTL 1.329 1.428
YVILTILTII 0.378 1.771
YVLGIFLRKL 1.514 1.819
YVLGVFLRKL 1.911 1.728
YVMCTGSFKL 1.274 1.378
YVVIAILTVV 1.127 1.382
YVVIGILTLA 1.676 1.628
YVVIGLLFMI 2.147 1.231
YVVTTDISEM 3.065 2.086
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