Support percentile ranks
* First cut of supporting quantiles ("percent ranks") per allele. Closes #87. * Some refactoring of amino_acid.py This builds on #114
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- mhcflurry/amino_acid.py 107 additions, 0 deletionsmhcflurry/amino_acid.py
- mhcflurry/class1_affinity_prediction/class1_affinity_predictor.py 144 additions, 9 deletions...y/class1_affinity_prediction/class1_affinity_predictor.py
- mhcflurry/class1_affinity_prediction/class1_neural_network.py 2 additions, 4 deletions...lurry/class1_affinity_prediction/class1_neural_network.py
- mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py 17 additions, 0 deletions...finity_prediction/train_allele_specific_models_command.py
- mhcflurry/encodable_sequences.py 3 additions, 107 deletionsmhcflurry/encodable_sequences.py
- mhcflurry/percent_rank_transform.py 77 additions, 0 deletionsmhcflurry/percent_rank_transform.py
- test/test_amino_acid.py 3 additions, 3 deletionstest/test_amino_acid.py
- test/test_percent_rank_transform.py 24 additions, 0 deletionstest/test_percent_rank_transform.py
- test/test_train_allele_specific_models_command.py 26 additions, 21 deletionstest/test_train_allele_specific_models_command.py
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