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Commit 8c4055a0 authored by Tim O'Donnell's avatar Tim O'Donnell
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fix

parent ef428b7d
No related merge requests found
dist: bionic
language: python
python:
- "3.6"
......@@ -17,6 +18,7 @@ before_install:
# Useful for debugging any issues with conda
- conda info -a
- free -m
- make -v
addons:
apt:
packages:
......
......@@ -161,7 +161,7 @@ training data. The data we use for our released predictors can be downloaded wit
It looks like this:
.. command-output::
bzcat "$(mhcflurry-downloads path data_curated)/curated_training_data.no_mass_spec.csv.bz2" | head -n 3
bzcat "$(mhcflurry-downloads path data_curated)/curated_training_data.csv.bz2" | head -n 3
:shell:
:nostderr:
......
......@@ -91,13 +91,13 @@ def test_basic():
alleles=experiment_to_alleles,
n_flanks=test_df.n_flank.values,
c_flanks=test_df.c_flank.values,
verbose=2)
verbose=2).presentation_score.values
test_df["prediction2"] = predictor.predict(
peptides=test_df.peptide.values,
sample_names=test_df.sample_id.values,
alleles=experiment_to_alleles,
verbose=2)
verbose=2).presentation_score.values
add_prediction_cols(test_df, predictor)
......
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