Skip to content
Snippets Groups Projects
Commit 792a9aa3 authored by Timothy ODonnell's avatar Timothy ODonnell Committed by Tim O'Donnell
Browse files

fix

parent 733d8f4f
No related branches found
No related tags found
No related merge requests found
Hide whitespace changes
Inline Side-by-side
downloads-generation/data_mass_spec_benchmark/GENERATE.WITH_HPC_CLUSTER.sh
+ 2
− 0
View file @ 792a9aa3
...@@ -47,6 +47,8 @@ for kind in with_mass_spec no_mass_spec ...@@ -47,6 +47,8 @@ for kind in with_mass_spec no_mass_spec
do do
python run_mhcflurry.py \ python run_mhcflurry.py \
proteome_peptides.csv.bz2 \ proteome_peptides.csv.bz2 \
--chunk-size 1000000 \
--batch-size 65536 \
--models-dir "$(mhcflurry-downloads path models_class1_pan)/models.$kind" \ --models-dir "$(mhcflurry-downloads path models_class1_pan)/models.$kind" \
--allele $(cat alleles.txt) \ --allele $(cat alleles.txt) \
--out "predictions/mhcflurry.$kind" \ --out "predictions/mhcflurry.$kind" \
......
0% or .
You are about to add 0 people to the discussion. Proceed with caution.
Finish editing this message first!
Please register or to comment