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Commit 75dec823 authored by Tim O'Donnell's avatar Tim O'Donnell
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fix

parent 42ba21de
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mhcflurry/train_allele_specific_models_command.py
+ 3
− 1
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...@@ -431,7 +431,9 @@ def subselect_df_held_out(df, recriprocal_held_out_fraction=10, seed=0): ...@@ -431,7 +431,9 @@ def subselect_df_held_out(df, recriprocal_held_out_fraction=10, seed=0):
(train, test) = next(kf.split(df, df.key)) (train, test) = next(kf.split(df, df.key))
selected_allele_peptides = df.iloc[train].allele_peptide.unique() selected_allele_peptides = df.iloc[train].allele_peptide.unique()
result_df = df.allele_peptide.isin(selected_allele_peptides) result_df = df.loc[
df.allele_peptide.isin(selected_allele_peptides)
]
del result_df["allele_peptide"] del result_df["allele_peptide"]
return result_df return result_df
......
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