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Commit 7519ab78 authored by Tim O'Donnell's avatar Tim O'Donnell
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fix

parent 00f0f345
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...@@ -132,6 +132,7 @@ def run(argv=sys.argv[1:]): ...@@ -132,6 +132,7 @@ def run(argv=sys.argv[1:]):
else: else:
alleles = input_predictor.supported_alleles alleles = input_predictor.supported_alleles
metadata_dfs = {}
if args.data: if args.data:
df = pandas.read_csv(args.data) df = pandas.read_csv(args.data)
print("Loaded data: %s" % (str(df.shape))) print("Loaded data: %s" % (str(df.shape)))
...@@ -145,7 +146,6 @@ def run(argv=sys.argv[1:]): ...@@ -145,7 +146,6 @@ def run(argv=sys.argv[1:]):
df = df.loc[df.allele.isin(alleles)].dropna() df = df.loc[df.allele.isin(alleles)].dropna()
print("Selected %d alleles: %s" % (len(alleles), ' '.join(alleles))) print("Selected %d alleles: %s" % (len(alleles), ' '.join(alleles)))
metadata_dfs = {}
if args.exclude_data: if args.exclude_data:
exclude_df = pandas.read_csv(args.exclude_data) exclude_df = pandas.read_csv(args.exclude_data)
metadata_dfs["model_selection_exclude"] = exclude_df metadata_dfs["model_selection_exclude"] = exclude_df
......
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