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Commit 28dbf3fe authored by Tim O'Donnell's avatar Tim O'Donnell
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# mhcflurry
[MHC I](https://en.wikipedia.org/wiki/Major_histocompatibility_complex) ligand
prediction package with competitive accuracy and a fast, easily installed, and
prediction package with competitive accuracy and a fast and
[documented](http://www.hammerlab.org/mhcflurry/) open source codebase.
MHCflurry supports Class I peptide/MHC binding affinity prediction using
ensembles of allele-specific models. You can fit MHCflurry models to your own data
or download models that we fit to data from
[IEDB](http://www.iedb.org/home_v3.php) and [Kim 2014](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-241).
MHCflurry runs on Python versions 2.7 and 3.4+. It uses the [keras](https://keras.io)
neural network library via either the Tensorflow or Theano backends. GPUs may
optionally be used for a generally modest speed improvement.
ensembles of allele-specific models. It runs on Python versions 2.7 and 3.4+ using
the [keras](https://keras.io) neural network library.
If you find MHCflurry useful in your research please cite:
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