Merge pull request #145 from openvax/v1.3
pan allele prediction (MHCflurry 1.3.0)
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- downloads-generation/models_class1_pan_unselected/generate_hyperparameters.py 71 additions, 0 deletions.../models_class1_pan_unselected/generate_hyperparameters.py
- downloads-generation/random_peptide_predictions/GENERATE.sh 40 additions, 0 deletionsdownloads-generation/random_peptide_predictions/GENERATE.sh
- downloads-generation/random_peptide_predictions/random_predictions.py 67 additions, 0 deletions...neration/random_peptide_predictions/random_predictions.py
- mhcflurry/__init__.py 4 additions, 0 deletionsmhcflurry/__init__.py
- mhcflurry/allele_encoding.py 103 additions, 33 deletionsmhcflurry/allele_encoding.py
- mhcflurry/amino_acid.py 2 additions, 2 deletionsmhcflurry/amino_acid.py
- mhcflurry/calibrate_percentile_ranks_command.py 143 additions, 45 deletionsmhcflurry/calibrate_percentile_ranks_command.py
- mhcflurry/class1_affinity_predictor.py 395 additions, 138 deletionsmhcflurry/class1_affinity_predictor.py
- mhcflurry/class1_neural_network.py 648 additions, 153 deletionsmhcflurry/class1_neural_network.py
- mhcflurry/cluster_parallelism.py 351 additions, 0 deletionsmhcflurry/cluster_parallelism.py
- mhcflurry/common.py 27 additions, 0 deletionsmhcflurry/common.py
- mhcflurry/custom_loss.py 175 additions, 17 deletionsmhcflurry/custom_loss.py
- mhcflurry/data_dependent_weights_initialization.py 138 additions, 0 deletionsmhcflurry/data_dependent_weights_initialization.py
- mhcflurry/downloads.py 10 additions, 10 deletionsmhcflurry/downloads.py
- mhcflurry/downloads.yml 65 additions, 1 deletionmhcflurry/downloads.yml
- mhcflurry/downloads_command.py 43 additions, 16 deletionsmhcflurry/downloads_command.py
- mhcflurry/encodable_sequences.py 254 additions, 89 deletionsmhcflurry/encodable_sequences.py
- mhcflurry/ensemble_centrality.py 1 addition, 1 deletionmhcflurry/ensemble_centrality.py
- mhcflurry/hyperparameters.py 4 additions, 2 deletionsmhcflurry/hyperparameters.py
- mhcflurry/local_parallelism.py 101 additions, 15 deletionsmhcflurry/local_parallelism.py
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