Newer
Older
# This file describes collections of data and trained model weights that are
# released with MHCflurry. We refer to these datasets as "downloads."
#
# Downloads are organized into "releases", which generally correspond with
# MHCflurry releases of the same version.
#
# When users run "mhcflurry-downloads fetch" without specifying any downloads
# by name, the downloads with "default=true" are downloaded.
# This should usually be the latest release.
# An integer indicating what models the current MHCflurry code base is compatible
# with. Increment this integer when changes are made to MHCflurry that would break
# the use of previously released models.
current-compatibility-version: 2
# Add new releases here as they are made.
releases:
1.6.0:
compatibility-version: 2
downloads:
- name: models_class1_pan
url: https://github.com/openvax/mhcflurry/releases/download/1.6.0/models_class1_pan.selected.20200102.tar.bz2
url: https://github.com/openvax/mhcflurry/releases/download/1.6.0/models_class1_pan.20200102.tar.bz2
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default: false
- name: models_class1_pan_refined
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_refined.20191212c.tar.bz2
default: false
- name: models_class1_pan_variants
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20200101.tar.bz2.part.aa
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20200101.tar.bz2.part.ab
default: false
- name: data_mass_spec_benchmark
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.aa
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ab
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ac
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ad
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ae
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.af
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ag
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ah
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ai
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.aj
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ak
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.al
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.am
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.an
default: false
- name: data_mass_spec_annotated
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_annotated.20191226.tar.bz2
default: false
- name: data_references
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_references.20190927.tar.bz2
default: false
- name: data_iedb
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_iedb.20191220.tar.bz2
default: false
- name: data_systemhcatlas
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2
default: false
- name: allele_sequences
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/allele_sequences.20191231.tar.bz2
default: false
- name: random_peptide_predictions
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2
default: false
- name: data_published
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_published.20191220.tar.bz2
default: false
- name: data_curated
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_curated.20200101.tar.bz2
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default: true
# Older downloads
- name: models_class1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
default: true
- name: models_class1_selected_no_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
default: false
- name: models_class1_unselected
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
default: false
- name: models_class1_trained_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
default: false
- name: models_class1_unselected_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
default: false
- name: models_class1_minimal
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
default: false
1.5.0:
compatibility-version: 2
downloads:
- name: models_class1_pan
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan.20191221.tar.bz2
default: false
- name: models_class1_pan_unselected
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_unselected.20191221.tar.bz2.part.aa
default: false
- name: models_class1_pan_refined
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_refined.20191212c.tar.bz2
default: false
- name: models_class1_pan_variants
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20191226.tar.bz2.part.aa
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20191226.tar.bz2.part.ab
default: false
- name: data_mass_spec_benchmark
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.aa
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ab
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ac
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ad
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ae
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.af
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ag
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ah
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ai
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.aj
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.ak
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.al
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.am
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_benchmark.20191225.tar.bz2.part.an
default: false
- name: data_mass_spec_annotated
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_annotated.20191226.tar.bz2
default: false
- name: data_references
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_references.20190927.tar.bz2
default: false
- name: data_iedb
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_iedb.20191220.tar.bz2
default: false
- name: data_systemhcatlas
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2
default: false
- name: allele_sequences
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/allele_sequences.20190506.tar.bz2
default: false
- name: random_peptide_predictions
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2
default: false
- name: data_published
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_published.20191220.tar.bz2
default: false
- name: data_curated
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_curated.20191226.tar.bz2
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default: true
# Older downloads
- name: models_class1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
default: true
- name: models_class1_selected_no_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
default: false
- name: models_class1_unselected
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
default: false
- name: models_class1_trained_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
default: false
- name: models_class1_unselected_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
default: false
- name: models_class1_minimal
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
default: false
1.4.0:
compatibility-version: 2
downloads:
- name: models_class1_pan
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/models_class1_pan.20190928.tar.bz2
default: false
- name: models_class1_pan_unselected
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/models_class1_pan_unselected.20190924.tar.bz2.part.aa
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_refined.20191212c.tar.bz2
part_urls:
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20191101.tar.bz2.part.aa
- https://github.com/openvax/mhcflurry/releases/download/1.4.0/models_class1_pan_variants.20191101.tar.bz2.part.ab
url: https://www.dropbox.com/s/4wzotlnl58i1w32/data_mass_spec_benchmark.20191027.tar.bz2?dl=1
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_mass_spec_annotated.20191030.tar.bz2
- name: data_references
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_references.20190927.tar.bz2
default: false
- name: data_iedb
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_iedb.20190916.tar.bz2
default: false
- name: data_systemhcatlas
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2
default: false
- name: allele_sequences
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/allele_sequences.20190506.tar.bz2
default: false
- name: random_peptide_predictions
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2
default: false
- name: data_published
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_published.20191030.tar.bz2
default: false
- name: data_curated
url: https://github.com/openvax/mhcflurry/releases/download/1.4.0/data_curated.20191030.tar.bz2
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default: true
# Older downloads
- name: models_class1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
default: true
- name: models_class1_selected_no_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
default: false
- name: models_class1_unselected
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
default: false
- name: models_class1_trained_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
default: false
- name: models_class1_unselected_with_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
default: false
- name: models_class1_minimal
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
default: false
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan.20190829.tar.bz2
- name: models_class1_pan_unselected
Tim O'Donnell
committed
- http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.aa
- http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.ab
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_iedb.20190610.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/allele_sequences.20190506.tar.bz2
default: false
- name: random_peptide_predictions
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_published.tar.bz2
default: false
- name: data_curated
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_curated.20190516.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
default: true
- name: models_class1_selected_no_mass_spec
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
default: false
- name: models_class1_trained_with_mass_spec
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
default: false
- name: models_class1_unselected_with_mass_spec
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
default: false
- name: models_class1_minimal
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
1.2.0:
compatibility-version: 2
downloads:
- name: models_class1
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
default: true
- name: models_class1_selected_no_mass_spec
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
default: false
- name: models_class1_unselected_with_mass_spec
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
- name: models_class1_minimal
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
default: false
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/data_iedb.tar.bz2
default: false
- name: data_published
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/data_published.tar.bz2
default: false
- name: data_systemhcatlas
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/data_systemhcatlas.tar.bz2
default: false
- name: data_curated
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/data_curated.20180219.tar.bz2
1.1.0:
compatibility-version: 2
downloads:
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/models_class1.20180205.tar.bz2
- name: models_class1_no_mass_spec
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/models_class1_no_mass_spec.20180205.tar.bz2
default: true
- name: models_class1_experiments1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/models_class1_experiments1.tar.bz2
default: false
- name: cross_validation_class1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/cross_validation_class1.tar.bz2
default: false
- name: data_iedb
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/data_iedb.tar.bz2
default: false
- name: data_published
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/data_published.tar.bz2
default: false
- name: data_systemhcatlas
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/data_systemhcatlas.tar.bz2
default: false
- name: data_curated
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.1/data_curated.tar.bz2
default: true
1.0.0:
compatibility-version: 2
downloads:
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/models_class1.tar.bz2
default: true
- name: models_class1_experiments1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/models_class1_experiments1.tar.bz2
default: false
- name: cross_validation_class1
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/cross_validation_class1.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/data_iedb.tar.bz2
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_kim2014.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/pre-1.0/data_curated.tar.bz2
0.9.2:
compatibility-version: 2
downloads:
- name: models_class1
url: http://github.com/openvax/mhcflurry/releases/download/0.9.2/models_class1.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_curated.tar.bz2
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_kim2014.tar.bz2
Tim O'Donnell
committed
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_iedb.tar.bz2
default: false
- name: models_class1_experiments1
url: http://github.com/openvax/mhcflurry/releases/download/0.9.2/models_class1_experiments1.tar.bz2
compatibility-version: 2
downloads:
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/models_class1.tar.bz2
Tim O'Donnell
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url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_curated.tar.bz2
- name: data_kim2014
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_kim2014.tar.bz2
default: false
- name: data_iedb
Tim O'Donnell
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url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/data_iedb.tar.bz2
default: false
Tim O'Donnell
committed
- name: models_class1_experiments1
url: http://github.com/openvax/mhcflurry/releases/download/0.9.1/models_class1_experiments1.tar.bz2
Tim O'Donnell
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default: false
compatibility-version: 1
downloads:
- name: models_class1_allele_specific_ensemble
url: http://github.com/openvax/mhcflurry/releases/download/0.2.0/models_class1_allele_specific_ensemble.tar.bz2
Tim O'Donnell
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default: true
- name: models_class1_allele_specific_single
url: http://github.com/openvax/mhcflurry/releases/download/0.2.0/models_class1_allele_specific_single.tar.bz2
Tim O'Donnell
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default: false
url: http://github.com/openvax/mhcflurry/releases/download/0.0.8/data_kim2014.tar.bz2
default: true
- name: data_combined_iedb_kim2014
url: http://github.com/openvax/mhcflurry/releases/download/0.0.8/data_combined_iedb_kim2014.tar.bz2
compatibility-version: 1
downloads:
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url: http://github.com/openvax/mhcflurry/releases/download/0.0.8/models_class1_allele_specific_single.no_impute.tar.bz2
default: true
- name: data_kim2014
url: http://github.com/openvax/mhcflurry/releases/download/0.0.8/data_kim2014.tar.bz2
default: true
- name: data_combined_iedb_kim2014
url: http://github.com/openvax/mhcflurry/releases/download/0.0.8/data_combined_iedb_kim2014.tar.bz2