.travis.yml

sudo: false  # Use container-based infrastructure
language: python
python:
  - "2.7"
  - "3.6"
before_install:
  # Commands below copied from: http://conda.pydata.org/docs/travis.html
  # We do this conditionally because it saves us some downloading if the
  # version is the same.
  # See https://www.tensorflow.org/install/install_linux#use_pip_in_anaconda
  - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then
      wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh;
      export TF_PACKAGE=https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-1.10.1-cp27-none-linux_x86_64.whl;
    else
      wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh;
      export TF_PACKAGE=https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-1.10.1-cp35-cp35m-linux_x86_64.whl;
    fi
  - bash miniconda.sh -b -p $HOME/miniconda
  - export PATH="$HOME/miniconda/bin:$PATH"
  # reset the shell's lookup table for program name to path mappings
  - hash -r
  - conda config --set always_yes yes --set changeps1 no
  - conda update -q conda
  # Useful for debugging any issues with conda
  - conda info -a
addons:
  apt:
    packages:
    # install pandoc for use with pypandoc for converting the README
    # from markdown to RST
    - pandoc
install:
  - >
      conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION
      numpy scipy nose pandas matplotlib mkl-service theano
  - source activate test-environment
  - pip install tensorflow pypandoc pylint 'theano>=1.0.4'
  - pip install pypandoc pylint
  - pip install --ignore-installed --upgrade $TF_PACKAGE
  - pip install -r requirements.txt
  - pip install .
  - pip freeze
env:
  global:
    - PYTHONHASHSEED=0
    - MKL_THREADING_LAYER=GNU  # for theano
    - CUDA_VISIBLE_DEVICES=""  # for tensorflow
  matrix:
    - KERAS_BACKEND=theano
    - KERAS_BACKEND=tensorflow
script:
  # download data and models, then run tests
  - mhcflurry-downloads fetch data_curated models_class1 models_class1_pan allele_sequences
  - mhcflurry-downloads info  # just to test this command works
  - nosetests test -sv
  - ./lint.sh