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Command-line reference
============================

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See also the :ref:`tutorial <commandline_tutorial>`.

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.. _mhcflurry-predict:
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.. autoprogram:: mhcflurry.predict_command:parser
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    :prog: mhcflurry-predict
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.. _mhcflurry-class1-train-allele-specific-models:
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.. autoprogram:: mhcflurry.train_allele_specific_models_command:parser
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    :prog: mhcflurry-class1-train-allele-specific-models

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.. _mhcflurry-downloads:
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.. autoprogram:: mhcflurry.downloads_command:parser
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    :prog: mhcflurry-downloads