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Tim O'Donnell
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FROM nvidia/cuda:cudnn-runtime
MAINTAINER Tim O'Donnell <timodonnell@gmail.com>
RUN echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections && \
apt-get update && \
apt-get install --yes \
python3-dev python-dev \
python-virtualenv \
libblas-dev \
liblapack-dev \
gfortran \
libhdf5-serial-dev \
libyaml-dev \
libzmq3-dev \
libfreetype6-dev \
libpng12-dev \
pkg-config && \
apt-get clean && \
useradd --create-home --home-dir /home/user --shell /bin/bash user
# Set the locale (otherwise dask-distributed complains).
RUN locale-gen en_US.UTF-8
ENV LANG en_US.UTF-8
ENV LANGUAGE en_US:en
ENV LC_ALL en_US.UTF-8
USER user
ENV HOME=/home/user
ENV SHELL=/bin/bash
ENV USER=user
WORKDIR /home/user
# Setup virtual envs and install convenience packages.
RUN virtualenv venv-py3 --python=python3 && \
venv-py3/bin/pip install distributed jupyter seaborn && \
virtualenv venv-py2 --python=python && \
venv-py2/bin/pip install distributed jupyter seaborn
# Install mhcflurry.
COPY . ./mhcflurry
RUN venv-py3/bin/pip install ./mhcflurry && venv-py2/bin/pip install ./mhcflurry
EXPOSE 8888
CMD venv-py3/bin/jupyter notebook --no-browser