binder setup files

.gitignore

+# OS generated files
+.DS_Store
+.DS_Store?
+~$*
+.Spotlight*
+.Trashes
+ehthumbs.db
+Thumbs.db
+
+# exclude R & Rstudio temp files
+*.utf8.md
+*.knit.md
+.Rproj.user
+.Rhistory
+.Rapp.history
+.RData
+.Ruserdata
+.Rproj.user/
+.Rbuildignore
+packrat/lib*/
+packrat/src/
+
+# exclude Python and Jupyter temp files
+.ipynb_checkpoints
+*.pyc
+
+# exclude authentication tokens
+.httr-oauth
+
+# exclude cache
+*cache/*
+
+# exclude output files
+*.pdf
+*.html
+*.png
+*.jpeg
+*.jpg
+*.pptx
+*.docx
+*.xlsx
+*.csv
+
+# allow all files in data
+!data/*
+
+# allow all files in documents
+!documents/*
+
+# allow rendered html files in docs
+!docs/**/*.html

binder/environment.yml

+channels:
+  - QuantStack
+  - conda-forge
+dependencies:
+  - xeus-cling=0.4.8
+  - xtensor=0.18.1
+  - xtensor-blas=0.14.0
+  - matplotlib
+  - numpy
+  - pandas

binder/install.R

+### install regular packages
+
+install.packages("reticulate") # python support in RMarkdown
+# install.packages(c("rmarkdown", "caTools", "bitops")) # for knitting
+# install.packages(tidyverse) # install the entire tidyverse
+
+### install bioconductor packages
+# install.packages("BiocManager")
+# BiocManager::install("package")
+
+### install GitHub packages (tag = commit, branch or release tag)
+# install.packages("devtools")
+# devtools::install_github("user/repo, ref = "tag")
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binder/postBuild

+#!/bin/bash
+
+# Install JupyterLab extension
+jupyter labextension install @jupyterlab/toc

binder/runtime.txt

+r-2018-11-01
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