sudo: false # Use container-based infrastructure language: python python: - "2.7" - "3.6" before_install: - if [[ "$TRAVIS_PYTHON_VERSION" == "2.7" ]]; then wget https://repo.continuum.io/miniconda/Miniconda-latest-Linux-x86_64.sh -O miniconda.sh; else wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh; fi - bash miniconda.sh -b -p $HOME/miniconda - export PATH="$HOME/miniconda/bin:$PATH" # reset the shell's lookup table for program name to path mappings - hash -r - conda config --set always_yes yes --set changeps1 no - conda update -q conda # Useful for debugging any issues with conda - conda info -a addons: apt: packages: # install pandoc for use with pypandoc for converting the README # from markdown to RST - pandoc install: - > conda create -q -n test-environment python=$TRAVIS_PYTHON_VERSION numpy scipy nose pandas matplotlib mkl-service theano tensorflow pypandoc pylint - source activate test-environment - pip install -r requirements.txt - pip install . - pip freeze env: global: - PYTHONHASHSEED=0 - MKL_THREADING_LAYER=GNU # for theano - CUDA_VISIBLE_DEVICES="" # for tensorflow matrix: - KERAS_BACKEND=theano - KERAS_BACKEND=tensorflow script: # download data and models, then run tests - mhcflurry-downloads fetch data_curated models_class1 models_class1_pan allele_sequences - mhcflurry-downloads info # just to test this command works - nosetests test -sv - ./lint.sh