From ef9a61a968531cc8d36ad695eed4936acef3f7ea Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Tue, 28 Nov 2017 12:24:36 -0500
Subject: [PATCH] Use 1M peptides for calibration
---
downloads-generation/models_class1/GENERATE.sh | 1 +
1 file changed, 1 insertion(+)
diff --git a/downloads-generation/models_class1/GENERATE.sh b/downloads-generation/models_class1/GENERATE.sh
index a38faa48..68a1db10 100755
--- a/downloads-generation/models_class1/GENERATE.sh
+++ b/downloads-generation/models_class1/GENERATE.sh
@@ -31,6 +31,7 @@ time mhcflurry-class1-train-allele-specific-models \
--data "$(mhcflurry-downloads path data_curated)/curated_training_data.csv.bz2" \
--hyperparameters hyperparameters.yaml \
--out-models-dir models \
+ --percent-rank-calibration-num-peptides-per-length 1000000 \
--min-measurements-per-allele 100
cp $SCRIPT_ABSOLUTE_PATH .
--
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