From e6861c3f19166dbc1b4237d5d04e43266032f1c5 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sat, 25 Jan 2020 12:12:41 -0500
Subject: [PATCH] update
---
downloads-generation/data_evaluation/GENERATE.sh | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh
index 328efb24..2d904d9a 100755
--- a/downloads-generation/data_evaluation/GENERATE.sh
+++ b/downloads-generation/data_evaluation/GENERATE.sh
@@ -96,8 +96,10 @@ else
time mhcflurry-predict \
benchmark.monoallelic.csv.bz2 \
--allele-column hla \
+ --prediction-column-prefix prediction.no_additional_ms \
--models "$(mhcflurry-downloads path models_class1_pan_variants)/models.no_additional_ms" \
- --out benchmark.monoallelic.predictions.csv
+ --out benchmark.monoallelic.predictions.csv \
+ --no-throw
bzip2 -f benchmark.monoallelic.predictions.csv
ls -lh benchmark.monoallelic.predictions.csv.bz2
fi
--
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