diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh index 328efb24a7fb397f3e645d44ac4f4b82b0d2133f..2d904d9a7d8cc54e5bec5ab4df3e44f5c1ebfb88 100755 --- a/downloads-generation/data_evaluation/GENERATE.sh +++ b/downloads-generation/data_evaluation/GENERATE.sh @@ -96,8 +96,10 @@ else time mhcflurry-predict \ benchmark.monoallelic.csv.bz2 \ --allele-column hla \ + --prediction-column-prefix prediction.no_additional_ms \ --models "$(mhcflurry-downloads path models_class1_pan_variants)/models.no_additional_ms" \ - --out benchmark.monoallelic.predictions.csv + --out benchmark.monoallelic.predictions.csv \ + --no-throw bzip2 -f benchmark.monoallelic.predictions.csv ls -lh benchmark.monoallelic.predictions.csv.bz2 fi