From e14a4f7c89b5f2ec9584e7bab5ecd3aed7701337 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sat, 21 Dec 2019 21:34:32 -0500
Subject: [PATCH] fix

---
 downloads-generation/models_class1_pan/GENERATE.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/downloads-generation/models_class1_pan/GENERATE.sh b/downloads-generation/models_class1_pan/GENERATE.sh
index bdcc732a..2ef26eec 100755
--- a/downloads-generation/models_class1_pan/GENERATE.sh
+++ b/downloads-generation/models_class1_pan/GENERATE.sh
@@ -57,7 +57,7 @@ UNSELECTED_PATH="$(mhcflurry-downloads path models_class1_pan_unselected)"
 # For now we calibrate percentile ranks only for alleles for which there
 # is training data. Calibrating all alleles would be too slow.
 # This could be improved though.
-ALLELE_LIST=$(bzcat "$UNSELECTED_PATH/models.with_mass_spec/train_data.csv.bz2" | cut -f 1 -d , | grep -v allele | uniq | sort | uniq)
+ALLELE_LIST=$(bzcat "$UNSELECTED_PATH/models.combined/train_data.csv.bz2" | cut -f 1 -d , | grep -v allele | uniq | sort | uniq)
 ALLELE_LIST+=$(echo " " $(cat additional_alleles.txt | grep -v '#') )
 
 for kind in combined
-- 
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