From ddd988925f611c7ab0b1f4420721091232785e31 Mon Sep 17 00:00:00 2001
From: Alex Rubinsteyn <alex.rubinsteyn@gmail.com>
Date: Tue, 19 Apr 2016 21:41:00 -0400
Subject: [PATCH] restrict alleles in travis setup
---
.travis.yml | 5 +++--
1 file changed, 3 insertions(+), 2 deletions(-)
diff --git a/.travis.yml b/.travis.yml
index 45dd1f9f..860401d0 100644
--- a/.travis.yml
+++ b/.travis.yml
@@ -39,13 +39,14 @@ script:
# download training data
- script/download-kim-2013-dataset.sh
- script/download-iedb.sh
- - script/create-iedb-class1-dataset.py
+ # only install data for A*01:01 and A*02:01 for testing
+ - script/create-iedb-class1-dataset.py --alleles HLA-A*01:01 HLA-A*02:01
- script/create-combined-class1-dataset.py
# only installing A0101 and A0201 for testing purposes and with very limited
# training
- >
mhcflurry-train-class1-allele-specific-models.py
- --alleles HLA-A0101 HLA-A0101
+ --alleles HLA-A0101 HLA-A0201
--embedding-size 4
--hidden-layer-size 4
--training-epochs 5
--
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