From dcee952cd2f07cfaed36eb365fe7616e8cef47f6 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sat, 25 Jan 2020 11:50:43 -0500
Subject: [PATCH] fix
---
.../models_class1_presentation/GENERATE.sh | 7 +++++++
1 file changed, 7 insertions(+)
diff --git a/downloads-generation/models_class1_presentation/GENERATE.sh b/downloads-generation/models_class1_presentation/GENERATE.sh
index 81bcfaad..d528bb0a 100755
--- a/downloads-generation/models_class1_presentation/GENERATE.sh
+++ b/downloads-generation/models_class1_presentation/GENERATE.sh
@@ -94,9 +94,16 @@ mhcflurry-class1-train-presentation-models \
--cleavage-predictor-without-flanks "$(mhcflurry-downloads path models_class1_cleavage_variants)/models.selected.no_flank" \
--out-models-dir "$(pwd)/models"
+cp "$(mhcflurry-downloads path models_class1_pan)/models.combined/train_data.csv.bz2" models/affinity_predictor_train_data.csv.bz2
+cp "$(mhcflurry-downloads path models_class1_cleavage)/models/train_data.csv.bz2" models/cleavage_predictor_train_data.csv.bz2
+cp "$(mhcflurry-downloads path models_class1_cleavage_variants)/models.selected.no_flank/train_data.csv.bz2" models/cleavage_predictor_no_flank_train_data.csv.bz2
+
cp $SCRIPT_ABSOLUTE_PATH .
bzip2 -f "$LOG"
for i in $(ls LOG-worker.*.txt) ; do bzip2 -f $i ; done
RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2"
+mkdir .ignored
+mv hits_with_tpm.csv.bz2 .ignored/
tar -cjf "$RESULT" *
+mv .ignored/* . && rmdir .ignored
echo "Created archive: $RESULT"
--
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