diff --git a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf index f312bb0709afa97c395a627df568d06383cfb30a..e88afedd7d25ef5606d4b31cb4aaed49a0b33e61 100644 --- a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf +++ b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf @@ -1,8 +1,7 @@ #!/bin/bash #BSUB -J mhcf-{work_item_num} # Job name #BSUB -P acc_nkcancer # allocation account or Unix group -#BSUB -q gpu # queue -#BSUB -R rusage[ngpus_excl_p=1] # 1 exclusive GPU +#BSUB -q normal # queue #BSUB -R span[hosts=1] # one node #BSUB -n 1 # number of compute cores #BSUB -W 36:00 # walltime in HH:MM @@ -10,6 +9,8 @@ #BSUB -o {work_dir}/%J.stdout # output log (%J : JobID) #BSUB -eo {work_dir}/%J.stderr # error log #BSUB -L /bin/bash # Initialize the execution environment +# +#IGNORE -R rusage[ngpus_excl_p=1] # 1 exclusive GPU export TMPDIR=/local/JOBS/mhcflurry-{work_item_num} export PATH=$HOME/.conda/envs/py36b/bin/:$PATH @@ -17,8 +18,8 @@ export PATH=$HOME/.conda/envs/py36b/bin/:$PATH set -e free -m -module load cuda/10.1.105 -module load cudnn/7.1.1 +#module load cuda/10.1.105 +#module load cudnn/7.1.1 cd {work_dir} diff --git a/mhcflurry/cluster_parallelism.py b/mhcflurry/cluster_parallelism.py index bb5d669cbf1b5a557bbf35facfd3831e49930823..aff88c34081867788589f4418fa66054a9d33b5d 100644 --- a/mhcflurry/cluster_parallelism.py +++ b/mhcflurry/cluster_parallelism.py @@ -148,7 +148,7 @@ def cluster_results( result_item = d break if result_item is None: - os.sleep(60) + time.sleep(60) else: result_items.remove(result_item) break