From cd8133ceb45cb512df45b9dc72ac99249c4a401b Mon Sep 17 00:00:00 2001
From: Christopher Sumnicht <csumnicht@berkeley.edu>
Date: Thu, 30 May 2019 10:58:49 -0700
Subject: [PATCH] Package dependencies, backend change, and jupyter notebook
fix
---
Dockerfile | 13 +++++++------
1 file changed, 7 insertions(+), 6 deletions(-)
diff --git a/Dockerfile b/Dockerfile
index 986d828c..a931bc3e 100644
--- a/Dockerfile
+++ b/Dockerfile
@@ -1,4 +1,4 @@
-FROM nvidia/cuda:cudnn-runtime
+FROM nvidia/cuda
MAINTAINER Tim O'Donnell <timodonnell@gmail.com>
@@ -6,15 +6,16 @@ RUN echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selectio
apt-get clean && \
apt-get update && \
apt-get install --yes \
+ locales \
gfortran \
git \
libatlas-base-dev \
- libatlas3gf-base \
+ libatlas3-base \
libblas-dev \
libfreetype6-dev \
- libhdf5-serial-dev \
+ libhdf5-dev \
liblapack-dev \
- libpng12-dev \
+ libpng-dev \
libxml2-dev \
libxslt1-dev \
libyaml-dev \
@@ -53,7 +54,7 @@ RUN virtualenv venv-py3 --python=python3 && \
scikit-learn \
seaborn
-ENV KERAS_BACKEND theano
+ENV KERAS_BACKEND tensorflow
# RUN venv-py3/bin/pip install --upgrade https://storage.googleapis.com/tensorflow/linux/cpu/tensorflow-0.10.0-cp35-cp35m-linux_x86_64.whl
# Install mhcflurry and latest kubeface and download data and models.
@@ -62,4 +63,4 @@ RUN venv-py3/bin/pip install --upgrade ./mhcflurry git+https://github.com/hammer
&& venv-py3/bin/mhcflurry-downloads fetch
EXPOSE 8888
-CMD venv-py3/bin/jupyter notebook --no-browser
+ENTRYPOINT ["venv-py3/bin/jupyter", "notebook", "--ip=0.0.0.0", "--allow-root", "--no-browser"]
--
GitLab