From c16aecb48fb44a71d0b97fbbd527dfab21d9ede4 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Tue, 7 Jan 2020 18:06:53 -0500
Subject: [PATCH] fix
---
downloads-generation/models_class1_pan_variants/GENERATE.sh | 5 ++---
1 file changed, 2 insertions(+), 3 deletions(-)
diff --git a/downloads-generation/models_class1_pan_variants/GENERATE.sh b/downloads-generation/models_class1_pan_variants/GENERATE.sh
index 1d2c50c7..13d7aecb 100755
--- a/downloads-generation/models_class1_pan_variants/GENERATE.sh
+++ b/downloads-generation/models_class1_pan_variants/GENERATE.sh
@@ -72,8 +72,7 @@ fi
#VARIANTS=( no_additional_ms_ms_only_0nm ms_only_0nm no_additional_ms_0nm 0nm no_additional_ms ms_only no_pretrain compact_peptide 34mer_sequence single_hidden_no_pretrain affinity_only )
VARIANTS=( no_additional_ms_ms_only_0nm ms_only_0nm no_additional_ms_0nm 0nm no_additional_ms ms_only no_pretrain compact_peptide 34mer_sequence )
-
-for kind in "${variants[@]}"
+for kind in "${VARIANTS[@]}"
do
CONTINUE_INCOMPLETE_ARGS=""
if [ "$2" == "continue-incomplete" ] && [ -d "models.unselected.${kind}" ]
@@ -164,7 +163,7 @@ done
echo "Done training. Beginning model selection."
-for kind in "${variants[@]}"
+for kind in "${VARIANTS[@]}"
do
MODELS_DIR="models.unselected.${kind}"
mhcflurry-class1-select-pan-allele-models \
--
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