From b8c7d511e2b9cbe3e547458cb30e1ee1e8c00fb1 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Mon, 27 Jan 2020 09:48:46 -0500
Subject: [PATCH] fix
---
downloads-generation/data_evaluation/GENERATE.sh | 12 ++++++++++++
1 file changed, 12 insertions(+)
diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh
index 4babeee9..569db7ad 100755
--- a/downloads-generation/data_evaluation/GENERATE.sh
+++ b/downloads-generation/data_evaluation/GENERATE.sh
@@ -177,6 +177,18 @@ fi
### PRECOMPUTED ####
for variant in netmhcpan4.ba netmhcpan4.el mixmhcpred
do
+ if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.monoallelic.${variant}.csv.bz2" ]
+ then
+ echo "Reusing existing monoallelic ${variant}"
+ else
+ cp $SCRIPT_DIR/join_with_precomputed.py .
+ echo time python join_with_precomputed.py \
+ \""$(pwd)/benchmark.monoallelic.csv.bz2"\" \
+ ${variant} \
+ --out "$(pwd)/benchmark.monoallelic.${variant}.csv" >> commands/monoallelic.${variant}.sh
+ echo bzip2 -f "$(pwd)/benchmark.monoallelic.${variant}.csv" >> commands/monoallelic.${variant}.sh
+ fi
+
if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.multiallelic.${variant}.csv.bz2" ]
then
echo "Reusing existing multiallelic ${variant}"
--
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