diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh index 4babeee98ae9c3fb8bddad1725507a4446c9deff..569db7ad4d47fb7bad0cb0146149f941db7c0242 100755 --- a/downloads-generation/data_evaluation/GENERATE.sh +++ b/downloads-generation/data_evaluation/GENERATE.sh @@ -177,6 +177,18 @@ fi ### PRECOMPUTED #### for variant in netmhcpan4.ba netmhcpan4.el mixmhcpred do + if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.monoallelic.${variant}.csv.bz2" ] + then + echo "Reusing existing monoallelic ${variant}" + else + cp $SCRIPT_DIR/join_with_precomputed.py . + echo time python join_with_precomputed.py \ + \""$(pwd)/benchmark.monoallelic.csv.bz2"\" \ + ${variant} \ + --out "$(pwd)/benchmark.monoallelic.${variant}.csv" >> commands/monoallelic.${variant}.sh + echo bzip2 -f "$(pwd)/benchmark.monoallelic.${variant}.csv" >> commands/monoallelic.${variant}.sh + fi + if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.multiallelic.${variant}.csv.bz2" ] then echo "Reusing existing multiallelic ${variant}"