From b651138e25b5ef239cf0ace15cb07d708afaeb62 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Wed, 17 May 2017 17:32:50 -0400
Subject: [PATCH] Configure logging
---
.../train_allele_specific_models_command.py | 4 +++-
1 file changed, 3 insertions(+), 1 deletion(-)
diff --git a/mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py b/mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py
index fd5172a5..e8a67737 100644
--- a/mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py
+++ b/mhcflurry/class1_affinity_prediction/train_allele_specific_models_command.py
@@ -14,7 +14,7 @@ import mhcnames
from .class1_binding_predictor import Class1BindingPredictor
-
+from ..common import configure_logging
def normalize_allele_name(s):
try:
@@ -65,6 +65,8 @@ parser.add_argument(
def run():
args = parser.parse_args(sys.argv[1:])
+ configure_logging(verbose=args.verbosity > 1)
+
hyperparameters_lst = json.load(open(args.hyperparameters))
assert isinstance(hyperparameters_lst, list)
print("Loaded hyperparameters list: %s" % str(hyperparameters_lst))
--
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