diff --git a/downloads-generation/allele_sequences/GENERATE.sh b/downloads-generation/allele_sequences/GENERATE.sh
index b87d8a36f99c296de0966d54959ac87456a266fa..d320ed9ab13b2ace1e65f12a5151ff99bd063df9 100755
--- a/downloads-generation/allele_sequences/GENERATE.sh
+++ b/downloads-generation/allele_sequences/GENERATE.sh
@@ -32,6 +32,7 @@ clustalo --version
 
 cd $SCRATCH_DIR/$DOWNLOAD_NAME
 cp $SCRIPT_DIR/make_allele_sequences.py .
+cp $SCRIPT_DIR/select_alleles_to_disambiguate.py .
 cp $SCRIPT_DIR/filter_sequences.py .
 cp $SCRIPT_DIR/class1_pseudosequences.csv .
 cp $SCRIPT_ABSOLUTE_PATH .