From a8c9d31da16e11c51e5a61c7633511a392f58ec5 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Mon, 22 Apr 2019 11:26:12 -0400
Subject: [PATCH] Add alignment_method hyperparameter

---
 mhcflurry/class1_neural_network.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/mhcflurry/class1_neural_network.py b/mhcflurry/class1_neural_network.py
index 7e3e667f..f47a3eeb 100644
--- a/mhcflurry/class1_neural_network.py
+++ b/mhcflurry/class1_neural_network.py
@@ -70,6 +70,7 @@ class Class1NeuralNetwork(object):
     """
 
     input_encoding_hyperparameter_defaults = HyperparameterDefaults(
+        alignment_method="pad_middle",
         left_edge=4,
         right_edge=4)
     """
-- 
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