From a7ee0cb7e5e1cd454233264016036d900e141a7e Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Thu, 22 Sep 2016 12:55:06 -0400
Subject: [PATCH] Tweak GENERATE scripts to disable python output buffering
---
.../models_class1_allele_specific_single/GENERATE.sh | 1 +
.../GENERATE.sh | 1 +
2 files changed, 2 insertions(+)
mode change 100644 => 100755 downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh
diff --git a/downloads-generation/models_class1_allele_specific_single/GENERATE.sh b/downloads-generation/models_class1_allele_specific_single/GENERATE.sh
index 889a961f..f49fc99c 100755
--- a/downloads-generation/models_class1_allele_specific_single/GENERATE.sh
+++ b/downloads-generation/models_class1_allele_specific_single/GENERATE.sh
@@ -13,6 +13,7 @@ DOWNLOAD_NAME=models_class1_allele_specific_single
SCRATCH_DIR=/tmp/mhcflurry-downloads-generation
SCRIPT_ABSOLUTE_PATH="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)/$(basename "${BASH_SOURCE[0]}")"
SCRIPT_DIR=$(dirname "$SCRIPT_ABSOLUTE_PATH")
+export PYTHONUNBUFFERED=1
mkdir -p "$SCRATCH_DIR"
rm -rf "$SCRATCH_DIR/$DOWNLOAD_NAME"
diff --git a/downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh b/downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh
old mode 100644
new mode 100755
index 80c7e46a..943cc6fc
--- a/downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh
+++ b/downloads-generation/models_class1_allele_specific_single_kim2014_only/GENERATE.sh
@@ -13,6 +13,7 @@ DOWNLOAD_NAME=models_class1_allele_specific_single_kim2014_only
SCRATCH_DIR=/tmp/mhcflurry-downloads-generation
SCRIPT_ABSOLUTE_PATH="$(cd "$(dirname "${BASH_SOURCE[0]}")" && pwd)/$(basename "${BASH_SOURCE[0]}")"
SCRIPT_DIR=$(dirname "$SCRIPT_ABSOLUTE_PATH")
+export PYTHONUNBUFFERED=1
mkdir -p "$SCRATCH_DIR"
rm -rf "$SCRATCH_DIR/$DOWNLOAD_NAME"
--
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