From 877c60a0f49f991c0566475eb3bcb78a8711b781 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Thu, 8 Feb 2018 12:09:01 -0500
Subject: [PATCH] Workaround tqdm issue
Add suggested workaround for https://github.com/tqdm/tqdm/issues/481
---
mhcflurry/downloads_command.py | 2 ++
mhcflurry/train_allele_specific_models_command.py | 1 +
2 files changed, 3 insertions(+)
diff --git a/mhcflurry/downloads_command.py b/mhcflurry/downloads_command.py
index 8dfc5fb6..34403ab7 100644
--- a/mhcflurry/downloads_command.py
+++ b/mhcflurry/downloads_command.py
@@ -29,6 +29,8 @@ import errno
import tarfile
from tempfile import mkstemp
from tqdm import tqdm
+tqdm.monitor_interval = 0 # see https://github.com/tqdm/tqdm/issues/481
+
try:
from urllib.request import urlretrieve
except ImportError:
diff --git a/mhcflurry/train_allele_specific_models_command.py b/mhcflurry/train_allele_specific_models_command.py
index 30a8ae69..c05ce479 100644
--- a/mhcflurry/train_allele_specific_models_command.py
+++ b/mhcflurry/train_allele_specific_models_command.py
@@ -15,6 +15,7 @@ import pandas
import yaml
from mhcnames import normalize_allele_name
import tqdm # progress bar
+tqdm.monitor_interval = 0 # see https://github.com/tqdm/tqdm/issues/481
from .class1_affinity_predictor import Class1AffinityPredictor
from .common import configure_logging, set_keras_backend
--
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