From 86c91f9e8f011fa3510eaad9d1c12112db87aade Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Wed, 10 Jul 2019 17:36:04 -0400
Subject: [PATCH] fix
---
.../cluster_submit_script_header.mssm_hpc.lsf | 4 ++++
1 file changed, 4 insertions(+)
diff --git a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
index 14b5fcbc..d8d9342e 100644
--- a/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
+++ b/downloads-generation/models_class1_pan_unselected/cluster_submit_script_header.mssm_hpc.lsf
@@ -10,6 +10,10 @@
#BSUB -eo {work_dir}/%J.stderr # error log
#BSUB -L /bin/bash # Initialize the execution environment
+export TMPDIR=/local/JOBS/haplocnv-{case}
+export PATH=$HOME/.conda/envs/py37/bin/:$PATH
+
set -e
free -m
cd {work_dir}
+
--
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