From 8408607e52892c2f73b879e66c7e47c45269172a Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Wed, 21 Feb 2018 17:24:41 -0500
Subject: [PATCH] fix
---
.../GENERATE.sh | 16 ++++++++--------
1 file changed, 8 insertions(+), 8 deletions(-)
diff --git a/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh b/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh
index 9d9f603e..1ee78237 100755
--- a/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh
+++ b/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh
@@ -25,6 +25,8 @@ git status
cd $SCRATCH_DIR/$DOWNLOAD_NAME
+cp $SCRIPT_DIR/write_validation_data.py .
+
mkdir models
GPUS=$(nvidia-smi -L 2> /dev/null | wc -l) || GPUS=0
@@ -42,14 +44,12 @@ time python ./write_validation_data.py \
wc -l test.csv
-time mhcflurry-predict \
- test.csv \
- --prediction-column-prefix "mhcflurry_unselected_" \
- --models "$(mhcflurry-downloads path models_class1_unselected)/models" \
- --out test.csv
-
-wc -l test.csv
-
+#time mhcflurry-predict \
+# test.csv \
+# --prediction-column-prefix "mhcflurry_unselected_" \
+# --models "$(mhcflurry-downloads path models_class1_unselected)/models" \
+# --out test.csv
+#wc -l test.csv
time mhcflurry-class1-select-allele-specific-models \
--data test.csv \
--
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