diff --git a/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh b/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh index 9d9f603e39af9dba8afd6b672760221cd841391e..1ee7823770e8a67c3b9fd5077ffd49d70e08b685 100755 --- a/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh +++ b/downloads-generation/models_class1_selected_no_mass_spec/GENERATE.sh @@ -25,6 +25,8 @@ git status cd $SCRATCH_DIR/$DOWNLOAD_NAME +cp $SCRIPT_DIR/write_validation_data.py . + mkdir models GPUS=$(nvidia-smi -L 2> /dev/null | wc -l) || GPUS=0 @@ -42,14 +44,12 @@ time python ./write_validation_data.py \ wc -l test.csv -time mhcflurry-predict \ - test.csv \ - --prediction-column-prefix "mhcflurry_unselected_" \ - --models "$(mhcflurry-downloads path models_class1_unselected)/models" \ - --out test.csv - -wc -l test.csv - +#time mhcflurry-predict \ +# test.csv \ +# --prediction-column-prefix "mhcflurry_unselected_" \ +# --models "$(mhcflurry-downloads path models_class1_unselected)/models" \ +# --out test.csv +#wc -l test.csv time mhcflurry-class1-select-allele-specific-models \ --data test.csv \