From 804d89b782e49bf906560c538b775830cb756457 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sun, 15 Sep 2019 21:41:25 -0400
Subject: [PATCH] Copy training data into new models dir when doing model
selection
---
.../models_class1_pan/GENERATE.WITH_HPC_CLUSTER.sh | 2 ++
downloads-generation/models_class1_pan/GENERATE.sh | 2 ++
2 files changed, 4 insertions(+)
diff --git a/downloads-generation/models_class1_pan/GENERATE.WITH_HPC_CLUSTER.sh b/downloads-generation/models_class1_pan/GENERATE.WITH_HPC_CLUSTER.sh
index 84e040cd..5d21a2e6 100755
--- a/downloads-generation/models_class1_pan/GENERATE.WITH_HPC_CLUSTER.sh
+++ b/downloads-generation/models_class1_pan/GENERATE.WITH_HPC_CLUSTER.sh
@@ -62,6 +62,8 @@ do
--max-models 32 \
--num-jobs $NUM_JOBS --max-tasks-per-worker 1 --gpus $GPUS --max-workers-per-gpu 1
+ cp "$MODELS_DIR/train_data.csv.bz2" "models.${kind}/"
+
# Percentile rank calibration is run on the cluster.
# For now we calibrate percentile ranks only for alleles for which there
# is training data. Calibrating all alleles would be too slow.
diff --git a/downloads-generation/models_class1_pan/GENERATE.sh b/downloads-generation/models_class1_pan/GENERATE.sh
index 216942dc..a0842d31 100755
--- a/downloads-generation/models_class1_pan/GENERATE.sh
+++ b/downloads-generation/models_class1_pan/GENERATE.sh
@@ -55,6 +55,8 @@ do
--num-jobs 0 \
--num-jobs $NUM_JOBS --max-tasks-per-worker 1 --gpus $GPUS --max-workers-per-gpu 1
+ cp "$MODELS_DIR/train_data.csv.bz2" "models.${kind}/"
+
# For now we calibrate percentile ranks only for alleles for which there
# is training data. Calibrating all alleles would be too slow.
# This could be improved though.
--
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