From 798336f56ad11f2d86bfec31fac3c9652df9143e Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Thu, 3 Oct 2019 16:29:22 -0400
Subject: [PATCH] add data_mass_spec_benchmark download
---
downloads-generation/data_mass_spec_benchmark/GENERATE.sh | 2 +-
mhcflurry/downloads.yml | 4 ++++
2 files changed, 5 insertions(+), 1 deletion(-)
diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
index b1bc0029..bab80ffe 100755
--- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
+++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
@@ -119,7 +119,7 @@ do
--allele $(cat alleles.txt) \
--out "$OUT_DIR" \
--worker-log-dir "$SCRATCH_DIR/$DOWNLOAD_NAME" \
- --cluster-script-prefix-path $SCRIPT_DIR/cluster_submit_script_header.mssm_hpc.lsf \
+ --cluster-script-prefix-path $SCRIPT_DIR/cluster_submit_script_header.mssm_hpc.gpu.lsf \
$REUSE_ARG $EXTRA_ARGS
done
diff --git a/mhcflurry/downloads.yml b/mhcflurry/downloads.yml
index 6ae2b549..76a9360d 100644
--- a/mhcflurry/downloads.yml
+++ b/mhcflurry/downloads.yml
@@ -29,6 +29,10 @@ releases:
- https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/models_class1_pan_unselected.20190924.tar.bz2.part.aa
default: false
+ - name: data_mass_spec_benchmark
+ url: https://www.dropbox.com/s/0oh8vljyt4zeo7o/data_mass_spec_benchmark.20191001.tar.bz2?dl=1
+ default: false
+
- name: data_mass_spec_annotated
url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_mass_spec_annotated.20190930.tar.bz2
default: false
--
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