diff --git a/README.md b/README.md index 951b28652db5204b9fcf5a740e83eaa4e3111273..66a82471dccad9805df09407c2a351a63654a0e6 100644 --- a/README.md +++ b/README.md @@ -14,13 +14,13 @@ ensembles of allele-specific models. You can fit MHCflurry models to your own da [IEDB](http://www.iedb.org/home_v3.php) and [Kim 2014](http://bmcbioinformatics.biomedcentral.com/articles/10.1186/1471-2105-15-241). Our combined dataset is available for download [here](https://github.com/hammerlab/mhcflurry/releases/download/pre-1.0.0-alpha/data_curated.tar.bz2). -We are working on a performance comparison of these models with other predictors -such as netMHCpan, which we plan to make available soon. - Pan-allelic prediction is supported in principle but is not yet performing accurately. Infrastructure for modeling other aspects of antigen processing is also implemented but experimental. +If you find MHCflurry useful in your research please cite: + +> O'Donnell, T. et al., 2017. MHCflurry: open-source class I MHC binding affinity prediction. bioRxiv. Available at: http://www.biorxiv.org/content/early/2017/08/09/174243. ## Setup @@ -105,4 +105,4 @@ predictions of the individual models. The training script is [here](downloads-ge ## Environment variables -The path where MHCflurry looks for model weights and data can be set with the `MHCFLURRY_DOWNLOADS_DIR` environment variable. This directory should contain subdirectories like "models_class1". \ No newline at end of file +The path where MHCflurry looks for model weights and data can be set with the `MHCFLURRY_DOWNLOADS_DIR` environment variable. This directory should contain subdirectories like "models_class1".