diff --git a/mhcflurry/train_allele_specific_models_command.py b/mhcflurry/train_allele_specific_models_command.py index ce6231ab53f644b37e55a622027f3808e879f217..b09194aaf4d20810f7b41d0475baa5f1c0b5db26 100644 --- a/mhcflurry/train_allele_specific_models_command.py +++ b/mhcflurry/train_allele_specific_models_command.py @@ -275,7 +275,7 @@ def run(argv=sys.argv[1:]): results = ( calibrate_percentile_ranks( allele=allele, - predictor=predictor, + predictor=args.out_model_dir, peptides=encoded_peptides) for allele in alleles) else: @@ -383,6 +383,8 @@ def calibrate_percentile_ranks(allele, predictor, peptides=None): global GLOBAL_DATA if peptides is None: peptides = GLOBAL_DATA["calibration_peptides"] + if isinstance(predictor, str): + predictor = Class1AffinityPredictor.load(predictor) predictor.calibrate_percentile_ranks( peptides=peptides, alleles=[allele])