diff --git a/docs/environment.yml b/docs/environment.yml new file mode 100644 index 0000000000000000000000000000000000000000..925d31e5ea9e388c88e13ddfcb5c50c08e1f32f8 --- /dev/null +++ b/docs/environment.yml @@ -0,0 +1,67 @@ +name: mhcflurry-minimal-2.7 +dependencies: +- certifi=2016.2.28=py27_0 +- funcsigs=1.0.2=py27_0 +- libprotobuf=3.2.0=0 +- mkl=2017.0.3=0 +- mock=2.0.0=py27_0 +- numpy=1.12.1=py27_0 +- openssl=1.0.2l=0 +- pbr=1.10.0=py27_0 +- protobuf=3.2.0=py27_0 +- readline=6.2=2 +- six=1.10.0=py27_0 +- sqlite=3.13.0=0 +- tensorflow=1.1.0=np112py27_0 +- tk=8.5.18=0 +- werkzeug=0.12.2=py27_0 +- wheel=0.29.0=py27_0 +- zlib=1.2.11=0 +- pip: + - alabaster==0.7.10 + - appdirs==1.4.3 + - babel==2.5.1 + - biopython==1.70 + - chardet==3.0.4 + - datacache==0.4.20 + - docutils==0.14 + - futures==3.2.0 + - gtfparse==0.0.6 + - idna==2.6 + - imagesize==0.7.1 + - jinja2==2.10 + - keras==2.1.2 + - markupsafe==1.0 + - memoized-property==1.0.3 + - mhcnames==0.3.11 + - mhctools==1.6.8 + - numpydoc==0.7.0 + - pandas==0.21.1 + - progressbar33==2.4 + - pydot==1.2.3 + - pyensembl==1.1.0 + - pygments==2.2.0 + - pypandoc==1.4 + - pyparsing==2.2.0 + - python-dateutil==2.6.1 + - pytz==2017.3 + - pyvcf==0.6.8 + - pyyaml==3.12 + - requests==2.18.4 + - scikit-learn==0.19.1 + - scipy==1.0.0 + - sercol==0.1.0 + - serializable==0.1.1 + - simplejson==3.13.2 + - snowballstemmer==1.2.1 + - sphinx==1.6.5 + - sphinx-rtd-theme==0.2.4 + - sphinxcontrib-autoprogram==0.1.3 + - sphinxcontrib-autorun2==0.1.post20140415 + - sphinxcontrib-programoutput==0.11 + - sphinxcontrib-websupport==1.0.1 + - tinytimer==0.0.0 + - typechecks==0.0.2 + - typing==3.6.2 + - urllib3==1.22 + - varcode==0.5.15 diff --git a/docs/intro.rst b/docs/intro.rst index 2644c317bf22b1583db285b0af2370ac86747ec5..6c0c260dfe58ebeb9e2048aafca6260eb10b6f14 100644 --- a/docs/intro.rst +++ b/docs/intro.rst @@ -55,7 +55,7 @@ tensorflow. .. code-block:: shell - $ conda create -q -n mhcflurry-env python=3.6 'tensorflow>=1.1.2' + $ conda create -q -n mhcflurry-env python=3.6 tensorflow $ source activate mhcflurry-env Then continue as above: diff --git a/readthedocs.yml b/readthedocs.yml new file mode 100644 index 0000000000000000000000000000000000000000..02f0e7baa25ef2410a68479543e96ce0c8b9ebc5 --- /dev/null +++ b/readthedocs.yml @@ -0,0 +1,2 @@ +conda: + file: docs/environment.yml