From 59d0c1306a027e113423dc5277fcb411c273920b Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Mon, 16 Sep 2019 17:38:30 -0400
Subject: [PATCH] Update downloads. Bump version to 1.4.0
---
downloads-generation/data_curated/GENERATE.sh | 6 +-
downloads-generation/data_iedb/GENERATE.sh | 6 +-
.../data_published/GENERATE.sh | 6 +-
mhcflurry/downloads.yml | 65 ++++++++++++++++++-
mhcflurry/version.py | 2 +-
5 files changed, 74 insertions(+), 11 deletions(-)
diff --git a/downloads-generation/data_curated/GENERATE.sh b/downloads-generation/data_curated/GENERATE.sh
index 30a17bd0..bbb24732 100755
--- a/downloads-generation/data_curated/GENERATE.sh
+++ b/downloads-generation/data_curated/GENERATE.sh
@@ -54,6 +54,6 @@ bzip2 curated_training_data.with_mass_spec.csv
cp $SCRIPT_ABSOLUTE_PATH .
bzip2 LOG.txt
-tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" *
-
-echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2"
+RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2"
+tar -cjf "$RESULT" *
+echo "Created archive: $RESULT"
diff --git a/downloads-generation/data_iedb/GENERATE.sh b/downloads-generation/data_iedb/GENERATE.sh
index 7165476b..9ae7cbe6 100755
--- a/downloads-generation/data_iedb/GENERATE.sh
+++ b/downloads-generation/data_iedb/GENERATE.sh
@@ -35,6 +35,6 @@ bzip2 tcell_full_v3.csv
cp $SCRIPT_ABSOLUTE_PATH .
bzip2 LOG.txt
-tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" *
-
-echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2"
+RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2"
+tar -cjf "$RESULT" *
+echo "Created archive: $RESULT"
diff --git a/downloads-generation/data_published/GENERATE.sh b/downloads-generation/data_published/GENERATE.sh
index ba90457a..b075f07b 100755
--- a/downloads-generation/data_published/GENERATE.sh
+++ b/downloads-generation/data_published/GENERATE.sh
@@ -35,6 +35,6 @@ wget -q https://github.com/openvax/mhcflurry/releases/download/pre-1.1/bdata.201
cp $SCRIPT_ABSOLUTE_PATH .
bzip2 LOG.txt
-tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" *
-
-echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2"
+RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2"
+tar -cjf "$RESULT" *
+echo "Created archive: $RESULT"
diff --git a/mhcflurry/downloads.yml b/mhcflurry/downloads.yml
index 70a4a8a8..ad283747 100644
--- a/mhcflurry/downloads.yml
+++ b/mhcflurry/downloads.yml
@@ -8,7 +8,7 @@
# by name, the downloads with "default=true" are downloaded.
# This should usually be the latest release.
-current-release: 1.3.0
+current-release: 1.4.0
# An integer indicating what models the current MHCflurry code base is compatible
# with. Increment this integer when changes are made to MHCflurry that would break
@@ -17,6 +17,69 @@ current-compatibility-version: 2
# Add new releases here as they are made.
releases:
+ 1.4.0:
+ compatibility-version: 2
+ downloads:
+ - name: models_class1_pan
+ url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan.20190829.tar.bz2
+ default: false
+
+ - name: models_class1_pan_unselected
+ part_urls:
+ - http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.aa
+ - http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.ab
+ default: false
+
+ - name: data_iedb
+ url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_iedb.20190916.tar.bz2
+ default: false
+
+ - name: data_systemhcatlas
+ url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2
+ default: false
+
+ - name: allele_sequences
+ url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/allele_sequences.20190506.tar.bz2
+ default: false
+
+ - name: random_peptide_predictions
+ url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2
+ default: false
+
+ - name: data_published
+ url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_published.tar.bz2
+ default: false
+
+ - name: data_curated
+ url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_curated.20190916.tar.bz2
+ default: true
+
+ # Older downloads
+ - name: models_class1
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2
+ default: true
+
+ - name: models_class1_selected_no_mass_spec
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2
+ default: false
+
+ - name: models_class1_unselected
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2
+ default: false
+
+ - name: models_class1_trained_with_mass_spec
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2
+ default: false
+
+ - name: models_class1_unselected_with_mass_spec
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2
+ default: false
+
+ - name: models_class1_minimal
+ url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2
+ default: false
+
+
1.3.0:
compatibility-version: 2
downloads:
diff --git a/mhcflurry/version.py b/mhcflurry/version.py
index 9c73af26..3e8d9f94 100644
--- a/mhcflurry/version.py
+++ b/mhcflurry/version.py
@@ -1 +1 @@
-__version__ = "1.3.1"
+__version__ = "1.4.0"
--
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