diff --git a/downloads-generation/data_curated/GENERATE.sh b/downloads-generation/data_curated/GENERATE.sh index 30a17bd016126ddf992c28ed0d39216c1ebfb520..bbb247324fe60bb6e10baa8c013477e29ec7ff48 100755 --- a/downloads-generation/data_curated/GENERATE.sh +++ b/downloads-generation/data_curated/GENERATE.sh @@ -54,6 +54,6 @@ bzip2 curated_training_data.with_mass_spec.csv cp $SCRIPT_ABSOLUTE_PATH . bzip2 LOG.txt -tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" * - -echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2" +RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2" +tar -cjf "$RESULT" * +echo "Created archive: $RESULT" diff --git a/downloads-generation/data_iedb/GENERATE.sh b/downloads-generation/data_iedb/GENERATE.sh index 7165476b6337a4517f94fac3defbdf56f3211cbe..9ae7cbe6c3a9cc87ef8654bb03355d50f05cb154 100755 --- a/downloads-generation/data_iedb/GENERATE.sh +++ b/downloads-generation/data_iedb/GENERATE.sh @@ -35,6 +35,6 @@ bzip2 tcell_full_v3.csv cp $SCRIPT_ABSOLUTE_PATH . bzip2 LOG.txt -tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" * - -echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2" +RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2" +tar -cjf "$RESULT" * +echo "Created archive: $RESULT" diff --git a/downloads-generation/data_published/GENERATE.sh b/downloads-generation/data_published/GENERATE.sh index ba90457a126e9ca44770317c81a7c2366a3edb15..b075f07b497f7ea6facd8ca5e90aa82703fbc008 100755 --- a/downloads-generation/data_published/GENERATE.sh +++ b/downloads-generation/data_published/GENERATE.sh @@ -35,6 +35,6 @@ wget -q https://github.com/openvax/mhcflurry/releases/download/pre-1.1/bdata.201 cp $SCRIPT_ABSOLUTE_PATH . bzip2 LOG.txt -tar -cjf "../${DOWNLOAD_NAME}.tar.bz2" * - -echo "Created archive: $SCRATCH_DIR/$DOWNLOAD_NAME.tar.bz2" +RESULT="$SCRATCH_DIR/${DOWNLOAD_NAME}.$(date +%Y%m%d).tar.bz2" +tar -cjf "$RESULT" * +echo "Created archive: $RESULT" diff --git a/mhcflurry/downloads.yml b/mhcflurry/downloads.yml index 70a4a8a842843d23eeb8ebdadfbc85b2db67f7eb..ad283747557994de1e0a252d6118c55fefa272ce 100644 --- a/mhcflurry/downloads.yml +++ b/mhcflurry/downloads.yml @@ -8,7 +8,7 @@ # by name, the downloads with "default=true" are downloaded. # This should usually be the latest release. -current-release: 1.3.0 +current-release: 1.4.0 # An integer indicating what models the current MHCflurry code base is compatible # with. Increment this integer when changes are made to MHCflurry that would break @@ -17,6 +17,69 @@ current-compatibility-version: 2 # Add new releases here as they are made. releases: + 1.4.0: + compatibility-version: 2 + downloads: + - name: models_class1_pan + url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan.20190829.tar.bz2 + default: false + + - name: models_class1_pan_unselected + part_urls: + - http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.aa + - http://github.com/openvax/mhcflurry/releases/download/pan-dev1/models_class1_pan_unselected.20190826.tar.bz2.part.ab + default: false + + - name: data_iedb + url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_iedb.20190916.tar.bz2 + default: false + + - name: data_systemhcatlas + url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_systemhcatlas.20190506.tar.bz2 + default: false + + - name: allele_sequences + url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/allele_sequences.20190506.tar.bz2 + default: false + + - name: random_peptide_predictions + url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/random_peptide_predictions.20190506.tar.bz2 + default: false + + - name: data_published + url: http://github.com/openvax/mhcflurry/releases/download/pan-dev1/data_published.tar.bz2 + default: false + + - name: data_curated + url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/data_curated.20190916.tar.bz2 + default: true + + # Older downloads + - name: models_class1 + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1.20180225.tar.bz2 + default: true + + - name: models_class1_selected_no_mass_spec + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_selected_no_mass_spec.20180225.tar.bz2 + default: false + + - name: models_class1_unselected + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_unselected.20180221.tar.bz2 + default: false + + - name: models_class1_trained_with_mass_spec + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_trained_with_mass_spec.20180228.tar.bz2 + default: false + + - name: models_class1_unselected_with_mass_spec + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2.1/models_class1_unselected_with_mass_spec.20180227.tar.bz2 + default: false + + - name: models_class1_minimal + url: http://github.com/openvax/mhcflurry/releases/download/pre-1.2/models_class1_minimal.20180226.tar.bz2 + default: false + + 1.3.0: compatibility-version: 2 downloads: diff --git a/mhcflurry/version.py b/mhcflurry/version.py index 9c73af26be70465839a5f43818dbab3f5c35571f..3e8d9f94621c6b29efab723e119a73a0dbe15089 100644 --- a/mhcflurry/version.py +++ b/mhcflurry/version.py @@ -1 +1 @@ -__version__ = "1.3.1" +__version__ = "1.4.0"