From 527e86cbaaee2c72ad1b37ac2d349ece8cc07a84 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Sat, 25 Jan 2020 12:05:34 -0500
Subject: [PATCH] update
---
downloads-generation/data_evaluation/GENERATE.sh | 3 +--
1 file changed, 1 insertion(+), 2 deletions(-)
diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh
index 8023c90f..328efb24 100755
--- a/downloads-generation/data_evaluation/GENERATE.sh
+++ b/downloads-generation/data_evaluation/GENERATE.sh
@@ -100,7 +100,7 @@ else
--out benchmark.monoallelic.predictions.csv
bzip2 -f benchmark.monoallelic.predictions.csv
ls -lh benchmark.monoallelic.predictions.csv.bz2
-done
+fi
### GENERATE BENCHMARK: MULTIALLELIC
if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.multiallelic.csv.bz2" ]
@@ -112,7 +112,6 @@ else
--hits "$(pwd)/hits_with_tpm.csv.bz2" \
--proteome-peptides "$(mhcflurry-downloads path data_mass_spec_benchmark)/proteome_peptides.all.csv.bz2" \
--decoys-per-hit 99 \
- --only-pmid 31844290 31495665 31154438 \
--only-format MULTIALLELIC \
--out "$(pwd)/benchmark.multiallelic.csv"
bzip2 -f benchmark.multiallelic.csv
--
GitLab