diff --git a/downloads-generation/data_evaluation/GENERATE.sh b/downloads-generation/data_evaluation/GENERATE.sh index 8023c90fc4ec4ed6a629a6d9685c522c51565e1d..328efb24a7fb397f3e645d44ac4f4b82b0d2133f 100755 --- a/downloads-generation/data_evaluation/GENERATE.sh +++ b/downloads-generation/data_evaluation/GENERATE.sh @@ -100,7 +100,7 @@ else --out benchmark.monoallelic.predictions.csv bzip2 -f benchmark.monoallelic.predictions.csv ls -lh benchmark.monoallelic.predictions.csv.bz2 -done +fi ### GENERATE BENCHMARK: MULTIALLELIC if [ "$2" == "continue-incomplete" ] && [ -f "benchmark.multiallelic.csv.bz2" ] @@ -112,7 +112,6 @@ else --hits "$(pwd)/hits_with_tpm.csv.bz2" \ --proteome-peptides "$(mhcflurry-downloads path data_mass_spec_benchmark)/proteome_peptides.all.csv.bz2" \ --decoys-per-hit 99 \ - --only-pmid 31844290 31495665 31154438 \ --only-format MULTIALLELIC \ --out "$(pwd)/benchmark.multiallelic.csv" bzip2 -f benchmark.multiallelic.csv