From 4e1824eacc43deea12e9c5f712fe83598a6086a3 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Fri, 13 Dec 2019 13:15:09 -0500
Subject: [PATCH] fix
---
downloads-generation/models_class1_pan_refined/GENERATE.sh | 1 +
1 file changed, 1 insertion(+)
diff --git a/downloads-generation/models_class1_pan_refined/GENERATE.sh b/downloads-generation/models_class1_pan_refined/GENERATE.sh
index a0cf2a4b..aa45c3ae 100755
--- a/downloads-generation/models_class1_pan_refined/GENERATE.sh
+++ b/downloads-generation/models_class1_pan_refined/GENERATE.sh
@@ -98,6 +98,7 @@ else
--expression "$(mhcflurry-downloads path data_curated)/rna_expression.csv.bz2" \
--decoys-per-hit 1 \
--out train.multiallelic.csv \
+ --alleles "HLA-A*02:20"
fi
ALLELE_LIST=$(bzcat "$MONOALLELIC_TRAIN" | cut -f 1 -d , | grep -v allele | uniq | sort | uniq)
--
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