diff --git a/docs/generate_class1_pan.py b/docs/generate_class1_pan.py
index af81ed36e1f1184d64fb2de2e30627cacf0e71cb..6a90d91a7aa4fcc19cebb46396a57c00e65320f8 100644
--- a/docs/generate_class1_pan.py
+++ b/docs/generate_class1_pan.py
@@ -36,13 +36,13 @@ parser.add_argument(
 )
 parser.add_argument(
     "--logo-cutoff",
-    default=0.01,
+    default=0.001,
     type=float,
     help="Fraction of top to use for motifs",
 )
 parser.add_argument(
     "--length-cutoff",
-    default=0.01,
+    default=0.001,
     type=float,
     help="Fraction of top to use for length distribution",
 )
diff --git a/mhcflurry/downloads.yml b/mhcflurry/downloads.yml
index cb732f7b09f0ffa38198c40444b4bab9db14f91e..da73b8be84796abf2f0791031ae4d6b6c50ad143 100644
--- a/mhcflurry/downloads.yml
+++ b/mhcflurry/downloads.yml
@@ -21,7 +21,7 @@ releases:
         compatibility-version: 2
         downloads:
             - name: models_class1_pan
-              url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/models_class1_pan.20190924.tar.bz2
+              url: https://github.com/openvax/mhcflurry/releases/download/pre-1.4.0/models_class1_pan.20190925.tar.bz2
               default: false
 
             - name: models_class1_pan_unselected