From 3e957f1e5b61ffcf838d1890bdaf18d21d302826 Mon Sep 17 00:00:00 2001
From: Tim O'Donnell <timodonnell@gmail.com>
Date: Mon, 30 Sep 2019 13:43:53 -0400
Subject: [PATCH] fix

---
 downloads-generation/data_mass_spec_benchmark/GENERATE.sh | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
index 46e3804e..3995b089 100755
--- a/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
+++ b/downloads-generation/data_mass_spec_benchmark/GENERATE.sh
@@ -27,7 +27,7 @@ cd $SCRATCH_DIR/$DOWNLOAD_NAME
 
 cp $SCRIPT_DIR/write_proteome_peptides.py .
 
-PEPTIDES=$(mhcflurry-downloads path data_mass_spec_annotated)/all_sequences.csv.bz2
+PEPTIDES=$(mhcflurry-downloads path data_mass_spec_annotated)/annotated_ms.csv.bz2
 REFERENCES_DIR=$(mhcflurry-downloads path data_references)
 
 python write_proteome_peptides.py \
-- 
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